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Table 2 Genes in cp genome of A. transsectum

From: Complete chloroplast genome sequences of the medicinal plant Aconitum transsectum (Ranunculaceae): comparative analysis and phylogenetic relationships

Category

Gene group

Gene name

Photosynthesis

Subunits of photosystem I

psaA, psaB, psaC, psaI, psaJ

Subunits of photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ

Subunits of NADH dehydrogenase

ndhA*, ndhB*(2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Subunits of cytochrome b/f complex

petA, petB*, petD*, petG, petL, petN

Subunits of ATP synthase

atpA, atpB, atpE, atpF*, atpH, atpI

Large subunit of rubisco

rbcL

Subunits photochlorophyllide reductase

-

Self-replication

Proteins of large ribosomal subunit

rpl14, rpl16*, rpl2*(2), rpl20, rpl22, rpl23(2), rpl33, rpl36

Proteins of small ribosomal subunit

rps11, rps12**(2), rps14, rps15, rps18, rps19, rps2, rps3, rps4, rps7(2), rps8

Subunits of RNA polymerase

rpoA, rpoB, rpoC1*, rpoC2

Ribosomal RNAs

rrn16(2), rrn23(2), rrn4.5(2), rrn5(2)

Transfer RNAs

trnA-UGC*(2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC*, trnG-UCC, trnH-GUG, trnI-CAU(2), trnI-GAU*(2), trnK-UUU*, trnL-CAA(2), trnL-UAA*, trnL-UAG, trnM-CAU, trnN-GUU(2), trnP-UGG, trnQ-UUG, trnR-ACG(2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC(2), trnV-UAC*, trnW-CCA, trnY-GUA, trnfM-CAU

Other genes

Maturase

matK

Protease

clpP**

Envelope membrane protein

cemA

Acetyl-CoA carboxylase

accD

c-type cytochrome synthesis gene

ccsA

Translation initiation factor

infA

other

-

Genes of unknown function

Conserved hypothetical chloroplast ORF

ycf1(2), ycf15(2), ycf2(2), ycf3**, ycf4

  1. Gene*: Gene with one intron; Gene**: Gene with two introns; Gene (2): Genes duplicated in the IR regions