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Table 1 Unity of sequencing quality of the samples in two sequencing platforms

From: Comparison of the Illumina NextSeq 2000 and GeneMind Genolab M sequencing platforms for spatial transcriptomics

Slide

A1-1

A1-2

B1-2

Platform

NextSeq 2000

Genolab M

NextSeq 2000

Genolab M

NextSeq 2000

Genolab M

Number of Reads

57,183,864

53,580,387

70,380,616

64,184,316

88,306,199

68,468,084

Valid Barcodes

98.20%

97.60%

97.40%

96.70%

98.30%

97.40%

Valid UMIs

100.00%

99.90%

100.00%

99.90%

100.00%

99.90%

Sequencing Saturation

31.90%

10.70%

69.70%

62.90%

48.80%

29.00%

Q30 Bases in Barcode

96.50%

95.50%

96.70%

94.70%

96.60%

94.90%

Q30 Bases in Probe Read

97.00%

95.10%

96.70%

94.30%

97.20%

94.80%

Q30 Bases in UMI

97.20%

95.20%

97.40%

94.40%

97.30%

94.60%