Table 2 Common genes annotated in the cp genomes
From: Analysis of the chloroplast genome and phylogenetic evolution of Bidens pilosa
Category of genes | Group of genes | Name of genes | number |
|---|---|---|---|
photosynthesis | Photosystem I | psaA, psaB, psaC, psaI, psaJ | 5 |
Photosystem II | psbA, psbB, psbC, psbD*,&, psbE, psbF, psbH, psbI, psbJ, psbK, psbM, psbN, psbT, psbZ, ycf3* | 15 | |
NADH-dehydrogenase | ndhA, ndhB(× 2)**, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | 12 | |
Cytochrome b/6f complex | petA, petB*, petD, petG, petL, petN | 6 | |
ATP synthase | atpA, atpB, atpE, atpF*, atpH, atpI | 6 | |
Rubisco | rbcL | 1 | |
Self replication | Large subunit of ribosome | rpl2(× 2)**, rpl14, rpl16, rpl20, rpl22, rpl23(× 2), rpl32, rpl33, rpl36 | 11 |
Small subunit of ribosome | rps2, rps3, rps4, rps7(× 2), rps8, rps11, rps12(× 2), rps14, rps15, rps16*, rps18, rps19 | 14 | |
DNA dependent RNA polymerase | rpoA, rpoB, rpoC1*, rpoC2 | 4 | |
rRNA genes | rrn16S(× 2), rrn23S(× 2),rrn4.5S(× 2),rrn5S(× 2) | 8 | |
tRNA genes | trnA-UGC(× 2)**, trnC-GCA*, trnD-GUC, trnE-UUC(× 3)*, trnF-GAA, trnG-GCC, trnH-GUG, trnK-UUU*, trnL-CAA(× 2), trnL-UAA*, trnL-UAG, trnM-CAU(× 4),trnN-GUU(× 2),trnP-UGG, trnQ-UUG, trnR-ACG(× 2),trnR-UCU, trnS-CGA*,trnS-GCU,trnS-GGA, trnS-UGA, trnT-UGU, trnV-GAC(× 2),trnW-CCA,trnY-GUA,(trnT-GGU#) | 35 | |
Other genes | accD, ccsA, cemA, (clpP*, @), infA, matK | 5 | |
Unknown function | ycf1, ycf2(× 2)**, ycf4, ycf15(× 2) | 6 | |