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Table 1 Data summary of metagenomics, metatranscriptomics and host transcriptomics

From: A holobiont approach towards polysaccharide degradation by the highly compartmentalised gut system of the soil-feeding higher termite Labiotermes labralis

 

De novo (meta)transcriptomics

MG

Foregut

Midgut

Hindgut

P1

P3

P4

P5

LF

Termite host

 Total quality-trimmed reads (Million)

21.4

29.3

26.9

23.8

27.3

20.6

NA

 Co-assembly length

94,526,795

NA

 Number of contigs

218,010

NA

 Number of ORFs

124,142 (14,281 of Insecta origin)

NA

 Number of CAZymes

313 (184 of Insecta origin)

NA

Gut microbiome

 Total quality-trimmed reads (Million)

65.5

71.7

66.3

67.1

55

64.3

270,5

 Co-assembly length (bp)

790,796,077

642,017,023

 Number of contigs

2,090,052

304,288

 Number of ORFs

2,114,234 (369,503 of prokaryotic origin)

763,653

 Number of CAZymesa (assigned to MAGs)

3534 (197)

1713

 Contigs binned to MAGs (% MG reads)

NA

11,098 (8.6%)

 % of mRNA reads mapped to good-quality MAGs

2.99

5.22

3.79

8.81

4.7

3.2

NA

  1. MG Metagenomics, LF Luminal fluids, NA Not applied
  2. aOnly CAZymes taxonomically assigned to Prokaryota were considered in this analysis