Fig. 5
From: Assembling highly repetitive Xanthomonas TALomes using Oxford Nanopore sequencing
Typical errors in homopolymers for ONT sequencing and how these may be corrected. The initial ONT-based assembly is lacking nucleotides in homopolymer stretches, which may be corrected computationally by comparison to the corresponding consensus from the HMM. The resulting corrected sequence is in accordance with the genome version after Illumina-based or PacBio-based polishing of the initial ONT-based assembly