Genetic variation and demographic history of Sudan desert sheep reveal two diversified lineages

BMC Genomics

Table 1 Complete D-loop region of the mtDNA diversity between two lineages and the three of Sudan desert sheep

Population	N	S	H	Hd (SD)	π (SD)	K	D	Fs	SSD (P-value)	‘r’ (P-value)	K^b*	D^C
Haplogroup A	18	36	17	0.994 (0.021)	0.007 (0.004)	11.266 (5.155)	-0.829 ( 0.221)	-8.556 (0.001)	0.019 (0.060)	0.031 (0.300)	44.748	0.03792
Haplogroup B	102	139	79	0.992 (0.003)	0.009 (0.005)	8.569 4.155	-1.917 (0.005)	-24.334 (0.000)	0.0007 (0.570)	0.004 (680)	44.748	0.03792
Total	120	175	96	0.993	0.008

N, sample size; S, number of polymorphic sites; H, number of haplotypes; Hd, haplotype diversity; π, nucleotide diversity; K, mean number of nucleotide differences; SD, standard deviation. D, Tajima’s D; Fs, Fu’s Fs; SSD, Sum of square deviation, ‘r’, Harpending’s raggedness index, Kb*; Average number of nucleotide differences between Haplogroups, DC; Average number of nucleotide substitution per site between Haplogroups

ISSN: 1471-2164