Table 1 Ratios of additive, dominance, and residual of genetic variance component to the total phenotypic variance for different PBLUP and GBLUP models
From: Preselection of QTL markers enhances accuracy of genomic selection in Norway spruce
Model | \({\sigma }_{a}^{2}\) | \({\sigma }_{as}^{2}\) | \({\sigma }_{r}^{2}\) | \({\sigma }_{rs}^{2}\) | \({\overline{\sigma }}_{e}^{2}\) | \({h}_{i}^{2}\)(SE) | \({H}_{i}^{2}\)(SE) | AIC |
|---|---|---|---|---|---|---|---|---|
HT6 | ||||||||
PBLUP-A | 6.48 (0.58) | 1.13 (0.30) | 28.99 (0.48) | 0.18 (0.01) | 43,680.9 | |||
PBLUP-AR | 4.44 (1.33) | 0.60 (0.23) | 0.92 (0.78) | 1.36 (0.39) | 28.24 (0.50) | 0.13 (0.04) | 0.15 (0.02) | 43,670.3 |
GBLUP-A | 6.37 (0.56) | 1.08 (0.28) | 29.05 (0.47) | 0.17 (0.01) | 43,672.7 | |||
GBLUP-AR* | 4.02 (0.84) | 0.62 (0.23) | 1.13 (0.49) | 1.31 (0.39) | 28.24 (0.50) | 0.11 (0.02) | 0.15 (0.02) | 43,656.4 |
HT12 | ||||||||
PBLUP-A | 30.7 (5.0) | 125.2 (4.0) | 0.20 (0.03) | 16,649.4 | ||||
PBLUP-AR | 13.0 (5.2) | 12.5 (4.3) | 123.6 (4.0) | 0.09 (0.03) | 0.17 (0.02) | 16,646.2 | ||
GBLUP-A | 26.6 (4.5) | 127.0 (4.0) | 0.17 (0.03) | 16,651.1 | ||||
GBLUP-AR* | 12.9 (4.5) | 12.28(4.0) | 123.6 (3.7) | 0.09 (0.03) | 0.17 (0.02) | 16,644.6 | ||
DBH | ||||||||
PBLUP-A | 60.0 (5.5) | 8.8 (2.8) | 313.4 (1.9) | 0.16 (0.01) | 64,017.5 | |||
PBLUP-AR | 57.4 (5.7) | 5.9 (2.6) | 0 (0) | 8.1 (4.3) | 313.8 (5.8) | 0.15 (0.01) | 0.15 (0.01) | 64,017.9 |
GBLUP-A | 56.8 (5.6) | 8.7 (2.7) | 319.6 (5.3) | 0.15 (0.01) | 64,023.2 | |||
GBLUP-AR* | 31.2 (7.3) | 6.4 (2.6) | 14.8 (4.7) | 7.5 (4.3) | 313.7 (5.8) | 0.09 (0.02) | 0.13 (0.01) | 64,011.3 |
PILO | ||||||||
PBLUP-A | 1.78 (0.14) | 1.51 (0.05) | 0.54 (0.02) | 4583.2 | ||||
PBLUP-AR | 1.78 (0.14) | 0 (0) | 1.51 (0.05) | 0.54 (0.02) | 4585.2 | |||
GBLUP-A | 1.73 (0.14) | 1.53 (0.05) | 0.53 (0.02) | 4580.9 | ||||
GBLUP-AR* | 1.33 (0.20) | 0.25 (0.11) | 1.51 (0.05) | 0.43 (0.05) | 0.51 (0.02) | 4576.9 | ||
BB | ||||||||
PBLUP-A | 1.30 (0.07) | 0.14 (0.01) | 0.33 (0.007) | 0.73 (0.01) | 2671.3 | |||
PBLUP-AR | 0.98 (0.23) | 0.09 (0.02) | 0.15 (0.12) | 0.04 (0.01) | 0.33 (0.007) | 0.62 (0.11) | 0.71 (0.02) | 2667.5 |
GBLUP-A | 1.25 (0.07) | 0.13 (0.01) | 0.33 (0.007) | 0.73 (0.01) | 2591.5 | |||
GBLUP-AR* | 1.05 (0.12) | 0.08 (0.02) | 0.09 (0.05) | 0.04 (0.01) | 0.32 (0.007) | 0.66 (0.04) | 0.72 (0.01) | 2579.1 |
FD | ||||||||
PBLUP-A | 0.014 (0.004) | 0.201 (0.006) | 0.06 (0.02) | -1354.3 | ||||
PBLUP-AR | 0.014 (0.004) | 0 (0) | 0.208 (0.006) | 0.06 (0.02) | 0.06 (0.02) | -1352.3 | ||
GBLUP-A* | 0.015 (0.004) | 0.208 (0.006) | 0.07 (0.02) | -1357.0 | ||||
GBLUP-AR | 0.015 (0.005) | 0 (0) | 0.208 (0.007) | 0.07 (0.02) | 0.07 (0.02) | -1355.0 | ||