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Fig. 2 | BMC Genomics

Fig. 2

From: Understanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing

Fig. 2

ISAV infection and transcription. (A) UMAP dimensionality reduction plot showing the infected and uninfected cells, where the threshold for infection was the local minima of the kernel density estimate of the distribution of percentage of viral counts on the log10 scale [43]. (B) UMAP dimensionality reduction plot showing the viral load of each cell measured as percentage of viral transcripts, calculated using all viral genes. (C) Viral load in each sample, measured as percentage of viral transcripts, calculated using all viral genes. (D) Dotplot showing the expression level, calculated as the percentage of the transcriptome of the cell that the viral genes represents, and the percentage of host cells with transcripts of each viral gene in each sample. (E) Heatmap showing the Pearson correlation between the expression of the viral genes

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BMC Genomics

ISSN: 1471-2164

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