Skip to main content

Table 1 Genome statistics for P. pacificasedimenti sp. nov. and P. pacificagyrus sp. nov

From: Genome characterization of two novel deep-sea sediment fungi, Penicillium pacificagyrus sp. nov. and Penicillium pacificasedimenti sp. nov., from South Pacific Gyre subseafloor sediments, highlights survivability

 

P. pacificasedimenti

P. pacificagyrus

Assembly Features

 N50 (bp)

1,348,856

3,205,559

 L50

7

3

 No. of Contigs (> 500 bp)

62

48

 Largest Contig (bp)

3,064,773

10,386,503

 Genome Size (Mbp)

32.6

36.4

 GC Content

48.23%

46.46%

Masked Repeats

 Total TEs

4.13%

9.86%

 SINEs

0.00%

0.00%

 LINEs

0.38%

0.20%

 LTR Elements

0.66%

4.53%

 DNA Elements

2.04%

0.31%

 Unclassified

1.05%

4.81%

 Simply Repeats

0.62%

0.69%

 Low Complexity

0.14%

0.14%

Annotation Features

 BUSCO Completenessa

98.70%

98.80%

 BUSCO Contaminationa

0.9%

0.5%

 Total No. of Genes

12,271

12,568

 Total No. of GOs

6,760

6,618

  1. aCompleteness and contamination estimations were based on BUSCO [27] using universal fungal-specific marker sets. Completeness is estimated from the number of complete marker genes, whereas contamination is estimated based on the number of duplicated marker genes
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us