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Fig. 5 | BMC Genomics

Fig. 5

From: Employing computational tools to design a multi-epitope vaccine targeting human immunodeficiency virus-1 (HIV-1)

Fig. 5

RMSD, Rg, RMSF, and partial density of HIV-1a. A The RMSD graph has the peak around 17,000 and 29,000 ps of almost 0.9 nm and 0.85 nm respectively, which is still much less and still in the required zone of 1.0 nm. The overall graph shows the stability, with an average RMSD value of almost 0.65 nm. B Radius of gyration shows a little peak at the start but has overall stable Rg value and shows that the protein is stably folded. C RMSF doesn’t show much deviation as per atom, which determines that the structure is stable. D Protein density graph is smooth and stable as per the graph for HIV-1a

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