Fig. 6

RMSD, Rg, RMSF, and partial density of HIV-1b. A The RMSD graph is almost stable around 0.8 nm and has no recognizable peak. Although the value is a bit higher as compared to HIV1a but is still less than 1.0 nm. The overall graph shows the stability, with an average RMSD value of almost 0.8 nm. B Radius of gyration shows a little peak at the start but has overall stable Rg value and shows that the protein is stably folded. C RMSF shows some peaks, suggesting that the protein structure has flexibility in some areas but still is in quite acceptable range, which determines that the structure is almost stable. D Protein density graph is smooth and stable as per the graph for HIV-1b