Fig. 2
From: A comprehensive analysis of copy number variations in diverse apple populations
Chromosomal distribution of CNVRs, SNPs and Genes in the apple genome and relationship with SNPs. A Numbers of CNVRs including loss (red), gain (blue) and both (green) events in 1-Mb nonoverlapping windows. B SNP density (SNPs per 1-Mb window). C TE density (TEs per 1-Mb window). D CNVR density heatmap (CNVRs per 1-Mb window). E Gene density heatmap (genes per 1-Mb window). F Histogram of the number of CNVR r2 ranks that are above the SNP-SNP r2 median value for CNVRs. G Boxplots showing distribution of minor allele frequencies for each LD category. H Proportion of each LD category in loss, gain and both events