Volume 15 Supplement 2

Abstracts from the 2nd International Genomic Medicine Conference (IGMC 2013)

Meeting abstracts

Edited by Stephen Scherer, Muhammad Abu-Elmagd, Ashraf Dallol, Jerry Shay, Mohammed Al-Qahtani, Abdelbaset Bauhmedia, Hans-Juergen Schulten, Farid Ahmed and Mourad Assidi

Publication of this supplement has been funded by Centre of Excellenece in Genomic Medicine Research (CEGMR), King Abdulaziz University (KAU). The Supplement Editors declare that they have no competing interests.

2nd International Genomic Medicine Conference (IGMC 2013). Go to conference site.

Jeddah, Kingdom of Saudi Arabia24-27 November 2013

Concatenated PDF 15S2

Page 2 of 2

The impact of CYP2C19 *2 and *3 polymorphism on clopidogrel response following coronary stenting in Saudi patients with acute coronary syndrome

Authors: Khalaf H, Al Meman A and Rasool S

Citation: BMC Genomics 2014 15(Suppl 2):P26

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Molecular docking of resveratrol with known protein structures as well as high-throughput meta-data analyses uncork the “French Paradox” and its potential “Druggable” targets in humans

Authors: Peter Natesan Pushparaj, Zeenat Mirza, Sajjad Karim, Kalamegam Gauthaman, Kothandaraman Narasimhan, Adel Abuzenadah, Mamdooh Gari, Adeel Chaudhary and Mohammed Alqahtani

Citation: BMC Genomics 2014 15(Suppl 2):P27

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Synergistic and antagonistic AML cell type-specific responses to 5-AZA-2’-Deoxycytidine and 1-H-D-Arabinofuranosylcytosine

Authors: Abeer Abd Elmoneim, Elisabeth Heuston, Daniel H Wai, Timothy Trich and Robert J Arceci

Citation: BMC Genomics 2014 15(Suppl 2):P28

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Enhanced wound healing by topical administration of d-limonene in alloxan induced diabetic mice through reduction of pro-inflammatory markers and chemokine expression

Authors: Majid Ahmad, Tajdar H. Khan, Mohd N Ansari and Sheikh F Ahmad

Citation: BMC Genomics 2014 15(Suppl 2):P29

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The evaluation of DiGeorge syndrome gene deletion using molecular cytogenetic techniques

Authors: Abeer A. Bahamat, Sahira A. Lary, Abdul Ali Peer Zada and Mohammed H. AL-Qahtani

Citation: BMC Genomics 2014 15(Suppl 2):P30

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Impact of World Health Organization (WHO) new standards on the referral pattern of infertile men for assisted reproduction

Authors: Saad Alshahrani, Ashok Agarwal, Mourad Assidi, Adel M. Abuzenadah, Damayanthi Durairajanayagam, Ahmet Ayaz and Rakesh Sharma

Citation: BMC Genomics 2014 15(Suppl 2):P31

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Association of HLA DRB variants to genetic predisposition to rheumatoid arthritis

Authors: Bushra S. Jarullah

Citation: BMC Genomics 2014 15(Suppl 2):P32

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Gene abnormalities in primary congenital glaucoma in Saudi Arabia: a study of known genes and search for novel genes

Authors: Osama M Badeeb

Citation: BMC Genomics 2014 15(Suppl 2):P33

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Application of molecular genetics techniques for detecting deleted segmental aneuploidy in Williams Syndrome

Authors: Afaf Magbooli, Etimad Huwait, Ibtessam R. Hussein and Mohammed AlQahtani

Citation: BMC Genomics 2014 15(Suppl 2):P34

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Prognostic significance of fibroblast growth factor 19 (FGF19) expression in breast invasive ductal carcinoma

Authors: Sahar Hakamy, Basmat Abdallah, Abdelbaset Buhmeida, Ashraf Dallol, Adnan Merdad, Jaudah Al-Maghrabi, Muhammad Abu-Elmagd, Mamdooh Gari, Adeel Chaudhary, Adel Abuzenadah, Taoufik Nedjadi, Eramah Ermiah, Fatima Thubaity and Mohammed Al-Qahtani

Citation: BMC Genomics 2014 15(Suppl 2):P35

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High-density expression profiling of renal cell carcinomas from Saudi Arabia: a preliminary study

Authors: Sajjad Karim, Hasan MA Farsi, Hans-Juergen Schulten, Jaudah A Al-Maghrabi, Nuha A Alansari, Alaa A Albogmi, Mamdooh A Gari, Adeel GA Chaudhary, Adel M Abuzenadah and Mohammed H Al Qahtani

Citation: BMC Genomics 2014 15(Suppl 2):P36

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Method of delivery of bone marrow stem cells to the articular joint influences their survival during arthroscopy

Authors: Reham Al Nono, Gauthaman Kalamegam, Haneen Alsehli, Farid Ahmed, Mohammed Alkaff, Mohammed Abbas, Wael Kafienah, Faten Al Sayes, Adeel Chaudhary, Adel Abuzenadah, Mohammed Al Qahtani and Mamdooh Gari

Citation: BMC Genomics 2014 15(Suppl 2):P37

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Drug formulation studies on regulation of BCL-2 family for treatment of autism

Authors: Iftikhar A Tayubi, Sayane Shome and Sarosh Hashmi

Citation: BMC Genomics 2014 15(Suppl 2):P38

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In vitroeffect of immune regulatory cytokines on vitiligo pathogenesis

Authors: Mala Singh, Mohmmad Shoab Mansuri, Naresh C. Laddha, Mitesh Dwivedi, Yogesh S. Marfatia and Rasheedunnisa Begum

Citation: BMC Genomics 2014 15(Suppl 2):P39

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Unlocking the complexity of hypoxia non-coding transcriptome landscape of breast cancer

Authors: Hani Choudhry, Johannes Schodel, Ashwag Albukhari, Spyros Oikonomopoulos, Syed Haider, Francesca Buffa, Ioannis Ragousis, David R. Mole and Adrian L. Harris

Citation: BMC Genomics 2014 15(Suppl 2):P40

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BioSearch: an in-house developed lab information management system for center of excellence in genomic medicine research

Authors: Sajjad Karim, Mona SZ Al-Kharraz, Abdelbaset S Buhmeida, Mamdooh A Gari, Adeel GA Chaudhary, Adel M Abuzenadah and Mohammed H Al-Qahtani

Citation: BMC Genomics 2014 15(Suppl 2):P41

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Effect of advancing paternal age on semen parameters and seminal oxidative stress markers in infertile men

Authors: Saad Alshahrani, Ashok Agarwal, Mourad Assidi, Adel M. Abuzenadah, Damayanthi Durairajanayagam, Ahmet Ayaz, Rakesh Sharma and Edmund Sabanegh

Citation: BMC Genomics 2014 15(Suppl 2):P42

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A single nucleotide polymorphism in Wilms’ tumor 1 gene and the risk of acute myeloid leukemia in Sudan

Authors: Amr A. Ahmed, H B. Eltahir, Malik HI Mustafa and Munsoor M. Munsoor

Citation: BMC Genomics 2014 15(Suppl 2):P43

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Identification of frequent MTNR1B methylation in breast cancer following the application of high-throughput methylome analysis

Authors: Shylu Mathew, Adnan Merdad, Jaudah Al-Maghrabi and Ashraf Dallol

Citation: BMC Genomics 2014 15(Suppl 2):P44

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Quercetin and Omega 3 ameliorate oxidative stress-induced neurodegeneration by Aluminium Chloride

Authors: Haytham Abdallah, Mohamed Afifi and Aaser Mohamed Abdelazim

Citation: BMC Genomics 2014 15(Suppl 2):P45

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In silico analysis of detrimental mutation in EPHB2 gene causing Alzheimer’s disease

Authors: Iftikhar Aslam Tayubi, Sayane Shome and Omar M Barukab

Citation: BMC Genomics 2014 15(Suppl 2):P46

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Effect of environmental factors on gene alterations in complex diseases: simulation study using Gene-Environment iNteraction Simulator 2

Authors: S Abdalla, Y Al-Hadeethi and E K. El-Shewy

Citation: BMC Genomics 2014 15(Suppl 2):P47

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Analysis of correlations between zona pellucida birefringence and molecular markers of oocyte developmental competence

Authors: Mourad Assidi, Markus Montag and Marc-André Sirard

Citation: BMC Genomics 2014 15(Suppl 2):P48

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Microarray based comparative genome hybridization detects genomic imbalances deletions and duplications in different epileptic patients of Saudi Arabia

Authors: Muhammad Imran Naseer, Muhammad Faheem, Maha Mohsin Al-Quaiti, Adeel G. Chaudhary, Nobutaka Hirokawa and Mohammed H. Al-Qahtani

Citation: BMC Genomics 2014 15(Suppl 2):P49

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Investigation of the genetic causes of non-syndromic hearing loss in the Western region of Saudi Arabia

Authors: Kamal Daghistani, Angham Abdulkarim, Afaf Bamanie, Malek Safieh, Samira Sogaty, Abdulmonem Al-Shaikh, Khalid O. Abulnaja, Manar Ata and Ashraf Dallol

Citation: BMC Genomics 2014 15(Suppl 2):P50

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Diabetes personalized: the use of whole-exome sequencing in order to identify familial type 2 diabetes mellitus susceptibility factors

Authors: Nehad Shaer, Jalaluddin J. Khan, Ashraf Dallol and Adel Abuzenadah

Citation: BMC Genomics 2014 15(Suppl 2):P51

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Application of array comparative genomic hybridization (array- CGH) for detection of chromosomal imbalances in children with developmental delay/congenital malformations in Saudi Arabia

Authors: Ibtessam Ramzi Hussein, Adeel G. Chaudhary, Randa Bassiouni, Maha AlQuaiti, Samira Sogaty and Mohammed Al-Qahtani

Citation: BMC Genomics 2014 15(Suppl 2):P52

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Initial characterization of drug resistant cancer stem cells isolated from primary brain tumors (astrocytoma) cell lines generated from Saudi patients

Authors: Ishaq Khan, Mohammed Bangash, Saleh S Baeesa, Awatif Jamal, Hanadi Qashqari, Adel Abuzenadah, Mohammed H. AlQahtani, Ghazi Damanhouri, Hans-Juergen Schulten, Deema Hussein and Adeel Chaudhary

Citation: BMC Genomics 2014 15(Suppl 2):P53

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Nanodiamonds for tracking of leukemic cells

Authors: Farid Ahmed and Adnan Memic

Citation: BMC Genomics 2014 15(Suppl 2):P54

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Gene expression profiling of lymph node positive-negative metastasis of primary breast cancer in Saudi Arabian patients

Authors: Adnan Merdad, Sajjad Karim, Hans-Juergen Schulten, Ashraf Dallol, Abdelbaset S Buhmeida, Fatima Al-Thubaity, Manar M Ata, Mamdooh A Gari, Adeel GA Chaudhary, Adel M Abuzenadah and Mohammed H Al-Qahtani

Citation: BMC Genomics 2014 15(Suppl 2):P55

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The effect of low level leukocytospermia on oxidative stress markers in infertile men

Authors: Saad Alshahrani, Ashok Agarwal, Mourad Assidi, Adel M. Abuzenadah, Ahmet Ayaz and Rakesh Sharma

Citation: BMC Genomics 2014 15(Suppl 2):P56

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Mismatch repair genes status in sporadic Saudi colorectal cancer patients

Authors: Manar Ata, Ashraf Dallol, Jaudah Al-Maghrabi, Abdulrahmn Al-Sibiany, Mahmoud Al-Ahwal, Mohammed Al-Qahtani and Abdelbaset Buhmeida

Citation: BMC Genomics 2014 15(Suppl 2):P57

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Adenosine kinase as a therapeutic target in traumatic optic neuropathy

Authors: Saif Ahmad, Nehal El-Sherbiny, Ahmed El-Sherbini, Sadan Fulzele and Gregory I Liou

Citation: BMC Genomics 2014 15(Suppl 2):P58

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Epidermal growth factor receptor (EGFR) and Stat3 signal through Kras and have mutually opposite effects on Cten

Authors: Saleh AlGhamdi and M ILyas

Citation: BMC Genomics 2014 15(Suppl 2):P59

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The use of fluorescence in situhybridization techniques in the detection of microdeletion syndromes

Authors: Muna M ALmughamsi, Taha A Kumosani, Emad A ALhamzi and Mohammed Al-Qahtani

Citation: BMC Genomics 2014 15(Suppl 2):P60

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Epilepsy: knowledge, attitude and awareness in Jeddah Saudi Arabia

Authors: Deena Fuad Haneef, Heyam Abdulsamad Abdulqayoum, Ahad Abdullah Sherbeni, Muhammad Faheem, Adeel G. Chaudhary, Mohammad H. Al-Qahtani and Muhammad Imran Naseer

Citation: BMC Genomics 2014 15(Suppl 2):P61

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Frequent microdeletions in conventional papillary thyroid carcinoma detected by high-density oligonucleotide microarrays

Authors: Alaa Al-Ahmadi, Reem Alotibi, Maha Al-Quaiti, Fai Ashgan, Kothandaraman Narasimhan, Etimad Huwait, Mamdooh Gari, Mohammed Hussein Al-Qahtani, Jaudah Al-Maghrabi and Hans-Juergen Schulten

Citation: BMC Genomics 2014 15(Suppl 2):P62

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Evaluation of the effect of Nigella sativa extract on human hepatocellular adenocarcinoma cell line (HepG2) in vitro

Authors: Fazal Khan, Gauthaman Kalamegam, Mamdooh Gari, Adel Abuzenadah, Adeel Chaudhary, Mohammed Al Qahtani, Khalid Al Ghamdi, Tariq Jamal, Abdulrahman Al Malki and Taha Kumosani

Citation: BMC Genomics 2014 15(Suppl 2):P63

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Brain and bone metastasis from malignant thyroid carcinomas originating in western Saudi Arabia

Authors: Ibtisam Baghallab, Manar Ata, Nafisa Abdullah Hassan, Shireen Hussain, Zuhoor Al-Mansouri, Deema Hussein, Jaudah Al-Maghrabi, Adeel Chaudhary, Mohammed Al-Qahtani and Hans-Juergen Schulten

Citation: BMC Genomics 2014 15(Suppl 2):P64

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Gene database for the development of genetic testing for hypertrophic cardiomyopathy

Authors: Justin Carlus Silas and Khalid Moghem Al Harbi

Citation: BMC Genomics 2014 15(Suppl 2):P65

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Array Comparative Genomic hybridization of breast cancer in the kingdom of Saudi Arabia

Authors: Lina Al-Harbi, Ahmed Shokry, Jamal Sabir, Adeel Chaudhary and Ashraf Dallol

Citation: BMC Genomics 2014 15(Suppl 2):P66

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Sunitinib effectively reduces clonogenic acute myeloid leukemia cells in vitro

Authors: Farid Ahmed, Manal Al-Oteibi, Samah Layati, Fatima Kadi, Adeel Chaudhary, Mamdooh Gari and Mohammed Al-Qahtani

Citation: BMC Genomics 2014 15(Suppl 2):P67

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Association of single nucleotide polymorphisms in FOXE1 and pre-MIR146A with papillary thyroid carcinoma

Authors: Nadia Bagatian, Ohoud Subhi, Shireen Hussain, Khalid Al-Ghamdi, Osman Abdel Al-Hamour, Mohammed Hussein Al-Qahtani, Adeel Chaudhary, Adel Abuzenadah, Jaudah Al-Maghrabi and Hans-Juergen Schulten

Citation: BMC Genomics 2014 15(Suppl 2):P68

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Smyd3, a histone methyltransferase, modulates the growth and differentiation of human cardiac stem cells

Authors: Narasimman Gurusamy, Junghyun Kim, Toru Hosoda, Gauthaman Karunakaran, Mubarak Al Gahtany and Annarosa Leri

Citation: BMC Genomics 2014 15(Suppl 2):P69

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Nodular goiter and hyperplastic lesion of the thyroid share common deregulated expression profiles

Authors: Ohoud Subhi, Nadia Baqtian, Manar Ata, Sajjad Karim, Khalid Al-Ghamdi, Osman Abdel Al-Hamour, Mohammed Hussein Al-Qahtani, Hans-Juergen Schulten and Jaudah Al-Maghrabi

Citation: BMC Genomics 2014 15(Suppl 2):P70

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Immunohistochemical study of tumor necrosis factor-alpha(TNF- α) expression in lung, liver, and spleen during aspergillosis infection

Authors: Batol Imran Dheeb

Citation: BMC Genomics 2014 15(Suppl 2):P71

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Effects of specific nutrients on tax-dependent activation of NF-κB and MMP-9 in human T-cell lymphotropic virus -1 positive malignant T-lymphocytes

Authors: Steve Harakeh, Mona Diab-Assaf, Rania Azar, Esam Azhar, Ghazi A. Damanhouri, Adeel Chaudary, Haitham Yacoub, Mourad Assidi, Muhammad M. Abu-Elmagd, Mohammed H. Alqahtani, Adel M. Abuzenadah, Taha Kumosani, Aleksandra Niedzwiecki, Mathias Rath and Elie Barbour

Citation: BMC Genomics 2014 15(Suppl 2):P72

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Analysis of chromosomal and genetic disorders in patients with recurrent miscarriages in Saudi Arabia

Authors: Rola F. Turki, Huda A. Banni, Mourad Assidi, Mohammed H. Al-Qahtani, Hassan S. Abduljabbar, Hassan S. Jamel, Abdulrahim A. Rouzi and Adel M. Abuzenadah

Citation: BMC Genomics 2014 15(Suppl 2):P73

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Abstracts from the 2nd International Genomic Medicine Conference (IGMC 2013)

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