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  1. Genome-wide comparisons of populations are widely used to explore the patterns of nucleotide diversity and sequence divergence to provide knowledge on how natural selection and genetic drift affect the genome....

    Authors: Fahime Mohamadnejad Sangdehi, Minal S. Jamsandekar, Erik D. Enbody, Mats E. Pettersson and Leif Andersson
    Citation: BMC Genomics 2024 25:459
  2. While rabbits are used as models in skin irritation tests, the presence of irregular patches and thickening on the dorsal skin can affect precise evaluation. In this study, genes associated with patchiness or ...

    Authors: Bohao Zhao, Jiawei Cai, Xiyu Zhang, Jiali Li, Zhiyuan Bao, Yang Chen and Xinsheng Wu
    Citation: BMC Genomics 2024 25:458
  3. In this study, we investigated the codon bias of twelve mitochondrial core protein coding genes (PCGs) in eight Pleurotus strains, two of which are from the same species. The results revealed that the codons of a...

    Authors: Wei Gao, Xiaodie Chen, Jing He, Ajia Sha, Yingyong Luo, Wenqi Xiao, Zhuang Xiong and Qiang Li
    Citation: BMC Genomics 2024 25:456
  4. Most proteins exert their functions by interacting with other proteins, making the identification of protein-protein interactions (PPI) crucial for understanding biological activities, pathological mechanisms,...

    Authors: Xin Zeng, Fan-Fang Meng, Meng-Liang Wen, Shu-Juan Li and Yi Li
    Citation: BMC Genomics 2024 25:406
  5. In response to seasonal cold and food shortage, the Xizang plateau frogs, Nanorana parkeri (Anura: Dicroglossidae), enter a reversible hypometabolic state where heart rate and oxygen consumption in skeletal muscl...

    Authors: Yonggang Niu, Xuejing Zhang, Shengkang Men, Tisen Xu, Haiying Zhang, Xiangyong Li, Kenneth B. Storey and Qiang Chen
    Citation: BMC Genomics 2024 25:454
  6. Insect Cytochrome P450 monooxygenase (CYPs or P450s) plays an important role in detoxifying insecticides, causing insect populations to develop resistance. However, the molecular functions of P450 gene family in

    Authors: Chun Fu, Ding Yang, Wen Cong Long, XiMeng Xiao, HanYu Wang, Na Jiang and YaoJun Yang
    Citation: BMC Genomics 2024 25:453
  7. Sturgeon species are living fossils that exhibit unique reproductive characteristics, and elucidation of the molecular processes governing the formation and quality of sturgeon eggs is crucial. However, compre...

    Authors: Natalia Kodzik, Andrzej Ciereszko, Bożena Szczepkowska, Agata Malinowska and Mariola Aleksandra Dietrich
    Citation: BMC Genomics 2024 25:451
  8. Circular RNAs (circRNAs) are a novel kind of non-coding RNAs proved to play crucial roles in the development of multiple diabetic complications. However, their expression and function in diabetes mellitus (DM)...

    Authors: Yan Huang, Hui-Min Liu, Qian-Ying Mao, Li-Ling Wu, Ruo-Lan Xiang and Guang-Yan Yu
    Citation: BMC Genomics 2024 25:450
  9. Previous studies have shown that protein kinase MoKin1 played an important role in the growth, conidiation, germination and pathogenicity in rice blast fungus, Magnaporthe oryzae. ΔMokin1 mutant showed significan...

    Authors: Lianhu Zhang, Yifan Zhang, Yankun Liu, Wenjing Miao, Jingyu Ai, Jingling Li, Song Peng, Songyan Li, Lifang Ye, Rong Zeng, Xugen Shi, Jian Ma, Yachun Lin, Weigang Kuang and Ruqiang Cui
    Citation: BMC Genomics 2024 25:449
  10. MeFtsZ2-1 is a key gene for plant plastid division, but the mechanism by which MeFtsZ2-1 affects pigment accumulation in cassava (Manihot esculenta Crantz) through plastids remains unclear. We found that MeFtsZ2-...

    Authors: Yuwei Zang, Kunlin Wu, Liangwang Liu, Fangfang Ran, Changyi Wang, Shuwen Wu, Dayong Wang, Jianchun Guo and Yi Min
    Citation: BMC Genomics 2024 25:448
  11. The health and size of the testes are crucial for boar fertility. Testicular development is tightly regulated by epigenetics. N6-methyladenosine (m6A) modification is a prevalent internal modification on mRNA ...

    Authors: Pengfei Zhang, Fei Zhang, Heming Sui, Xingyu Yang, Yiming Ji, Shenghao Zheng, Wei Li, Kun Cheng, Chonglong Wang, Jun Jiao, Xiaodong Zhang, Zubing Cao and Yunhai Zhang
    Citation: BMC Genomics 2024 25:447
  12. Air exposure is an inevitable source of stress that leads to significant mortality in Coilia nasus. Our previous research demonstrated that adding 10‰ NaCl to aquatic water could enhance survival rates, albeit th...

    Authors: Jun Gao, Qi Mang, Yuqian Liu, Yi Sun and Gangchun Xu
    Citation: BMC Genomics 2024 25:446
  13. Characterization of regulatory variants (e.g., gene expression quantitative trait loci, eQTL; gene splicing QTL, sQTL) is crucial for biologically interpreting molecular mechanisms underlying loci associated w...

    Authors: Yongjie Tang, Jinning Zhang, Wenlong Li, Xueqin Liu, Siqian Chen, Siyuan Mi, Jinyan Yang, Jinyan Teng, Lingzhao Fang and Ying Yu
    Citation: BMC Genomics 2024 25:445
  14. The transcriptome and metabolome dissection of the skeletal muscle of high- and low- growing individuals from a crossbred population of the indigenous Chongming white goat and the Boer goat were performed to d...

    Authors: Yuexia Lin, Lingwei Sun, Yuhua Lv, Rongrong Liao, Keqing Zhang, Jinyong Zhou, Shushan Zhang, Jiehuan Xu, Mengqian He, Caifeng Wu, Defu Zhang, Xiaohui Shen, Jianjun Dai and Jun Gao
    Citation: BMC Genomics 2024 25:443
  15. Genes containing the SET domain can catalyse histone lysine methylation, which in turn has the potential to cause changes to chromatin structure and regulation of the transcription of genes involved in diverse...

    Authors: Vithusan Suppiyar, Venkata Suresh Bonthala, Asis Shrestha, Stephanie Krey and Benjamin Stich
    Citation: BMC Genomics 2024 25:442
  16. Quorum sensing (QS) is a sophisticated cell-to-cell signalling mechanism that allows the coordination of important processes in microbial populations. The AI-1 and AI-2 autoinducer systems are among the best char...

    Authors: Iñigo de la Fuente, Saioa Manzano-Morales, David Sanz, Alicia Prieto and Jorge Barriuso
    Citation: BMC Genomics 2024 25:441
  17. Alzheimer's disease (AD) is a heritable neurodegenerative disease whose long asymptomatic phase makes the early diagnosis of it pivotal. Blood U-p53 has recently emerged as a superior predictive biomarker for ...

    Authors: Arash Yaghoobi and Seyed Amir Malekpour
    Citation: BMC Genomics 2024 25:440
  18. Chickpea is prone to many abiotic stresses such as heat, drought, salinity, etc. which cause severe loss in yield. Tolerance towards these stresses is quantitative in nature and many studies have been done to ...

    Authors: Sourav Panigrahi, Upendra Kumar, Sonu Swami, Yogita Singh, Priyanka Balyan, Krishna Pal singh, Om Parkash Dhankher, Rajeev K Varshney, Manish Roorkiwal, Khaled MA Amiri and Reyazul Rouf Mir
    Citation: BMC Genomics 2024 25:439
  19. Nutrient availability during early stages of development (embryogenesis and the first week post-hatch) can have long-term effects on physiological functions and bird metabolism. The embryo develops in a closed...

    Authors: Angélique Petit, Sophie Tesseraud, Anne Collin, Nathalie Couroussé, Cécile Berri, Elisabeth Le Bihan-Duval and Sonia Métayer-Coustard
    Citation: BMC Genomics 2024 25:438
  20. Liver transplantation is an effective treatment for liver failure. There is a large unmet demand, even as not all donated livers are transplanted. The clinical selection criteria for donor livers based on hist...

    Authors: Ankita Srivastava, Alexandra Manchel, John Waters, Manju Ambelil, Benjamin K. Barnhart, Jan B. Hoek, Ashesh P. Shah and Rajanikanth Vadigepalli
    Citation: BMC Genomics 2024 25:437
  21. Cassava mosaic disease (CMD), caused by Sri Lankan cassava mosaic virus (SLCMV) infection, has been identified as a major pernicious disease in Manihot esculenta Crantz (cassava) plantations. It is widespread in ...

    Authors: Somruthai Chaowongdee, Nattachai Vannatim, Srihunsa Malichan, Nattakorn Kuncharoen, Pumipat Tongyoo and Wanwisa Siriwan
    Citation: BMC Genomics 2024 25:436
  22. The oomycete Phytophthora cinnamomi is a devastating plant pathogen with a notably broad host range. It is the causal agent of Phytophthora root rot (PRR), arguably the most economically important yield-limiting ...

    Authors: Kayla A. Midgley, Noëlani van den Berg, Robert Backer and Velushka Swart
    Citation: BMC Genomics 2024 25:435
  23. The increasing burden of dengue virus on public health due to more explosive and frequent outbreaks highlights the need for improved surveillance and control. Genomic surveillance of dengue virus not only prov...

    Authors: Chantal B. F. Vogels, Verity Hill, Mallery I. Breban, Chrispin Chaguza, Lauren M. Paul, Afeez Sodeinde, Emma Taylor-Salmon, Isabel M. Ott, Mary E. Petrone, Dennis Dijk, Marcel Jonges, Matthijs R. A. Welkers, Timothy Locksmith, Yibo Dong, Namratha Tarigopula, Omer Tekin…
    Citation: BMC Genomics 2024 25:433
  24. Ophthalmic manifestations have recently been observed in acute and post-acute complications of COVID-19 caused by SARS-CoV-2 infection. Our precious study has shown that host RNA editing is linked to RNA viral...

    Authors: Yun-Yun Jin, Ya-Ping Liang, Wen-Hao Huang, Liang Guo, Li-Li Cheng, Tian-Tian Ran, Jin-Ping Yao, Lin Zhu and Jian-Huan Chen
    Citation: BMC Genomics 2024 25:431
  25. Although multiple chicken genomes have been assembled and annotated, the numbers of protein-coding genes in chicken genomes and their variation among breeds are still uncertain due to the low quality of these ...

    Authors: Siwen Wu, Tengfei Dou, Sisi Yuan, Shixiong Yan, Zhiqiang Xu, Yong Liu, Zonghui Jian, Jingying Zhao, Rouhan Zhao, Xiannian Zi, Dahai Gu, Lixian Liu, Qihua Li, Dong-Dong Wu, Junjing Jia, Changrong Ge…
    Citation: BMC Genomics 2024 25:430
  26. Expression quantitative trait loci (eQTL) studies aim to understand the influence of genetic variants on gene expression. The colocalization of eQTL mapping and GWAS strategy could help identify essential cand...

    Authors: Wentao Cai, Jian Hu, Yunsheng Zhang, Zhanbao Guo, Zhengkui Zhou and Shuisheng Hou
    Citation: BMC Genomics 2024 25:429
  27. Although many studies have been done to reveal artificial selection signatures in commercial and indigenous chickens, a limited number of genes have been linked to specific traits. To identify more trait-relat...

    Authors: Siwen Wu, Tengfei Dou, Kun Wang, Sisi Yuan, Shixiong Yan, Zhiqiang Xu, Yong Liu, Zonghui Jian, Jingying Zhao, Rouhan Zhao, Hao Wu, Dahai Gu, Lixian Liu, Qihua Li, Dong-Dong Wu, Changrong Ge…
    Citation: BMC Genomics 2024 25:428
  28. Current approaches to profile the single-cell transcriptomics of human pancreatic endocrine cells almost exclusively rely on freshly isolated islets. However, human islets are limited in availability. Furtherm...

    Authors: Gengqiang Xie, Maria Pilar Toledo, Xue Hu, Hyo Jeong Yong, Pamela Sandoval Sanchez, Chengyang Liu, Ali Naji, Jerome Irianto and Yue J. Wang
    Citation: BMC Genomics 2024 25:427
  29. In the beef industry, bull calves are usually castrated to improve flavor and meat quality; however, this can reduce their growth and slaughter performance. The gut microbiota is known to exert a significant i...

    Authors: Jinping Shi, Zemin Li, Li Jia, Yue Ma, Yongliang Huang, Pengjia He, Tao Ran, Wangjing Liu, Wangdong Zhang, Qiang Cheng, Zhao Zhang and Zhaomin Lei
    Citation: BMC Genomics 2024 25:426
  30. Purple non-heading Chinese cabbage [Brassica campestris (syn. Brassica rapa) ssp. chinensis] has become popular because of its richness in anthocyanin. However, anthocyanin only accumulates in the upper epidermis...

    Authors: Qian Zhou, Xinfeng Xu, Mengjie Li, Xiaoxue Yang, Meiyun Wang, Ying Li, Xilin Hou and Tongkun Liu
    Citation: BMC Genomics 2024 25:425
  31. Salinity impacts crop growth and productivity and lowers the activities of rhizosphere microbiota. The identification and utilization of habitat-specific salinity-adapted plant growth-promoting rhizobacteria (...

    Authors: V. S. Sunithakumari, Rahul R. Menon, Gayathri G. Suresh, Ramya Krishnan and N. Rameshkumar
    Citation: BMC Genomics 2024 25:424
  32. Single-cell clustering has played an important role in exploring the molecular mechanisms about cell differentiation and human diseases. Due to highly-stochastic transcriptomics data, accurate detection of cel...

    Authors: Wei Zhang, Ruochen Yu, Zeqi Xu, Junnan Li, Wenhao Gao, Mingfeng Jiang and Qi Dai
    Citation: BMC Genomics 2024 25:423
  33. Brasenia schreberi, a plant species traditionally utilized in Chinese medicine and cuisine, represents an early evolutionary stage among flowering plants (angiosperms). While the plastid genome of this species ha...

    Authors: Yuanyu Shan, Jingling Li, Xinmei Duan, Xue Zhang and Jie Yu
    Citation: BMC Genomics 2024 25:422
  34. Herpetospermum pedunculosum (Ser.) C. B. Clarke is a traditional Chinese herbal medicine that heavily relies on the lignans found in its dried ripe seeds (Herpetospermum caudigerum), which have antioxidant and h...

    Authors: Ziwei Zhu, Daihan Chen, Min Sun, Maotao Xiao, Peng Huang, Dongsheng Ren, Yixi Yang, Zhen Zhang, Qi Zhao and Rui Li
    Citation: BMC Genomics 2024 25:421
  35. Goats have achieved global prominence as essential livestock since their initial domestication, primarily owing to their remarkable adaptability to diverse environmental and production systems. Differential se...

    Authors: Weifeng Peng, Yiyuan Zhang, Lei Gao, Wanlu Shi, Zi Liu, Xinyu Guo, Yunxia Zhang, Bing Li, Guoyin Li, Jingya Cao and Mingsheng Yang
    Citation: BMC Genomics 2024 25:420
  36. The genus Mesorhizobium is shown by phylogenomics to be paraphyletic and forms part of a complex that includes the genera Aminobacter, Aquamicrobium, Pseudaminobacter and Tianweitania. The relationships for type ...

    Authors: Yan Li, Tingyan Guo, Liqin Sun, En-Tao Wang, J. Peter W. Young and Chang-Fu Tian
    Citation: BMC Genomics 2024 25:419
  37. Plant specialized (or secondary) metabolites (PSM), also known as phytochemicals, natural products, or plant constituents, play essential roles in interactions between plants and environment. Although many res...

    Authors: Wenhui Bai, Cheng Li, Wei Li, Hai Wang, Xiaohong Han, Peipei Wang and Li Wang
    Citation: BMC Genomics 2024 25:418
  38. Between 2020 and 2022, eight calves in a Nebraska herd (composite Simmental, Red Angus, Gelbvieh) displayed exercise intolerance during forced activity. In some cases, the calves collapsed and did not recover....

    Authors: Mackenzie C. Batt, Leila G. Venzor, Keri Gardner, Rachel R. Reith, Kelsey A. Roberts, Nicolas J. Herrera, Anna M. Fuller, Gary A. Sullivan, J. Travis Mulliniks, Matthew L. Spangler, Stephanie J. Valberg, David J. Steffen and Jessica L. Petersen
    Citation: BMC Genomics 2024 25:417
  39. Admixture occurs between different ethnic human populations. The global colonization in recent centuries by Europeans led to the most significant admixture in human history. While admixture may enhance genetic...

    Authors: Stephanie Andaluz, Bojin Zhao, Siddharth Sinha, Philip Naderev Panuringan Lagniton, Diogo Alpuim Costa, Xiaofan Ding, Miguel Brito and San Ming Wang
    Citation: BMC Genomics 2024 25:416
  40. Oxygen-induced retinopathy (OIR) animal model is widely used for retinopathy of prematurity (ROP) researches. The purpose of this study was to identify proteins and related pathways of OIR with or without anti...

    Authors: Zhaokai Xu, Yubo Wu, Jianbo Mao, Yiqi Chen, Huan Chen, Shian Zhang, Jiafeng Yu, Xinyi Deng and Lijun Shen
    Citation: BMC Genomics 2024 25:415
  41. Growth rate is a crucial economic trait for farmed animals, but the genetic regulation of this trait is largely unknown in non-model organisms such as shrimp.

    Authors: Xiuli Chen, Min Peng, Chunling Yang, Qiangyong Li, Pengfei Feng, Weilin Zhu, Yongde Zhang, Digang Zeng and Yongzhen Zhao
    Citation: BMC Genomics 2024 25:414
  42. Disulfidptosis is a novel form of programmed cell death induced by high SLC7A11 expression under glucose starvation conditions, unlike other known forms of cell death. However, the roles of disulfidptosis in c...

    Authors: Lei Ren, Jinwen Liu, Qingyuan Lin, Tianyi He, Guankai Huang, Weifeng Wang, Xunhao Zhan, Yu He, Bin Huang and Xiaopeng Mao
    Citation: BMC Genomics 2024 25:413
  43. Solanum aculeatissimum and Solanum torvum belong to the Solanum species, and they are essential plants known for their high resistance to diseases and adverse conditions. They are frequently used as rootstocks fo...

    Authors: Longhao Zhang, Chengqi Yi, Xin Xia, Zheng Jiang, Lihui Du, Shixin Yang and Xu Yang
    Citation: BMC Genomics 2024 25:412
  44. Genomic architecture is a key evolutionary trait for living organisms. Due to multiple complex adaptive and neutral forces which impose evolutionary pressures on genomes, there is a huge variability of genomic...

    Authors: Carles Galià-Camps, Cinta Pegueroles, Xavier Turon, Carlos Carreras and Marta Pascual
    Citation: BMC Genomics 2024 25:410

    The Correction to this article has been published in BMC Genomics 2024 25:457

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