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  1. While the size of chloroplast genomes (cpDNAs) is often influenced by the expansion and contraction of inverted repeat regions and the enrichment of repeats, it is the intergenic spacers (IGSs) that appear to ...

    Authors: Xiaolin Gu, Lingling Li, Xiaona Zhong, Yingjuan Su and Ting Wang
    Citation: BMC Genomics 2024 25:396
    Content type: Research Published on:

  3. Untargeted metabolomics and proteomics were employed to investigate the intracellular response of yak rumen epithelial cells (YRECs) to conditions mimicking subacute rumen acidosis (SARA) etiology, including e...

    Authors: JunMei Wang, Liyuan Shi, Xiaohong Zhang, Rui Hu, Ziqi Yue, Huawei Zou, Quanhui Peng, Yahui Jiang and Zhisheng Wang
    Citation: BMC Genomics 2024 25:394
    Content type: Research Published on:

  4. Accurately deciphering clonal copy number substructure can provide insights into the evolutionary mechanism of cancer, and clustering single-cell copy number profiles has become an effective means to unmask in...

    Authors: Ruixiang Li, Fangyuan Shi, Lijuan Song and Zhenhua Yu
    Citation: BMC Genomics 2024 25:393
    Content type: Research Published on:

  5. The pituitary directly regulates the reproductive process through follicle-stimulating hormone (FSH) and luteinizing hormone (LH). Transcriptomic research on the pituitaries of ewes with different FecB (fecundity...

    Authors: Jianqi Yang, Jishun Tang, Xiaoyun He, Ran Di, Xiaosheng Zhang, Jinlong Zhang, Xiaofei Guo, Wenping Hu and Mingxing Chu
    Citation: BMC Genomics 2024 25:392
    Content type: Research Published on:

  6. Developmental delay (DD), or intellectual disability (ID) is a very large group of early onset disorders that affects 1–2% of children worldwide, which have diverse genetic causes that should be identified. Ge...

    Authors: Heqian Ma, Lina Zhu, Xiao Yang, Meng Ao, Shunxiang Zhang, Meizhen Guo, Xuelin Dai, Xiuwei Ma and Xiaoying Zhang
    Citation: BMC Genomics 2024 25:391
    Content type: Research Published on:

  7. Medicinal plants are rich sources for treating various diseases due their bioactive secondary metabolites. Fenugreek (Trigonella foenum-graecum) is one of the medicinal plants traditionally used in human nutritio...

    Authors: Sara Lamei Javan, Arman Beyraghdar Kashkooli, AbdolAli Shojaeiyan and Sina Majidian
    Citation: BMC Genomics 2024 25:390
    Content type: Research Published on:

  8. The genus Sulfitobacter, a member of the family Roseobacteraceae, is widely distributed in the ocean and is believed to play crucial roles in the global sulfur cycle. However, gene clusters associated with sulfur...

    Authors: Xiaokun Xu, Mengdan He, Qingjie Xue, Xiuzhen Li and Ang Liu
    Citation: BMC Genomics 2024 25:389
    Content type: Research Published on:

  9. Myxozoa is a class of cnidarian parasites that encompasses over 2,400 species. Phylogenetic relationships among myxozoans remain highly debated, owing to both a lack of informative morphological characters and...

    Authors: Tatiana Orli Milkewitz Sandberg, Dayana Yahalomi, Noam Bracha, Michal Haddas-Sasson, Tal Pupko, Stephen D. Atkinson, Jerri L. Bartholomew, Jin Yong Zhang and Dorothée Huchon
    Citation: BMC Genomics 2024 25:388
    Content type: Research Published on:

  10. Drug-resistant tuberculosis (TB) is a major threat to global public health. Whole-genome sequencing (WGS) is a useful tool for species identification and drug resistance prediction, and many clinical laborator...

    Authors: Doyoung Kim, Jeong-Ih Shin, In Young Yoo, Sungjin Jo, Jiyon Chu, Woo Young Cho, Seung-Hun Shin, Yeun-Jun Chung, Yeon-Joon Park and Seung-Hyun Jung
    Citation: BMC Genomics 2024 25:387
    Content type: Software Published on:

  11. The growth and development of organism were dependent on the effect of genetic, environment, and their interaction. In recent decades, lots of candidate additive genetic markers and genes had been detected by ...

    Authors: Xinrui Liu, Mingxiu Wang, Jie Qin, Yaxin Liu, Shikai Wang, Shiyu Wu, Ming Zhang, Jincheng Zhong and Jiabo Wang
    Citation: BMC Genomics 2024 25:386
    Content type: Research Published on:

  12. The C2H2 zinc finger protein family plays important roles in plants. However, precisely how C2H2s function in Opisthopappus (Opisthopappus taihangensis and Opisthopappus longilobus) remains unclear.

    Authors: Xiaojuan Zhou, Ting Gao, Yimeng Zhang, Mian Han, Yuexin Shen, Yu Su, Xiaolong Feng, Qi Wu, Genlou Sun and Yiling Wang
    Citation: BMC Genomics 2024 25:385
    Content type: Research Published on:

  13. Curcubita ficifolia Bouché (Cucurbitaceae) has high value as a food crop and medicinal plant, and also has horticultural value as rootstock for other melon species. China is home to many different cultivars, but ...

    Authors: Shuilian He, Bin Xu, Siyun Chen, Gengyun Li, Jie Zhang, Junqiang Xu, Hang Wu, Xuejiao Li and Zhengan Yang
    Citation: BMC Genomics 2024 25:384
    Content type: Research Published on:

  14. The Asian yellow pond turtle (Mauremys mutica) is an important commercial freshwater aquaculture species in China. This species is a highly sexually dimorphic species, with males growing at a faster rate than fem...

    Authors: Xiaoli Liu, Haoyang Xu, Mingwei Peng, Chenyao Zhou, Chengqing Wei, Xiaoyou Hong, Wei Li, Chen Chen, Liqin Ji and Xinping Zhu
    Citation: BMC Genomics 2024 25:383
    Content type: Research Published on:

  15. Auxin/induced-3-acetic acid (Aux/IAA) is an important plant hormone that affects plant growth and resistance to abiotic stresses. Drought stress is a vital factor in reducing plant biomass yield and production...

    Authors: Jinqing Zhang, Shuxia Li, Xueqin Gao, Yaling Liu and BingZhe Fu
    Citation: BMC Genomics 2024 25:382
    Content type: Research Published on:

  16. Klebsiella pneumoniae is a Gram-negative Enterobacteriaceae that is classified by the World Health Organisation (WHO) as a Priority One ESKAPE pathogen. South and Southeast Asian countries are regions where both ...

    Authors: Souradeep Das, Anish K. Pandey, Denise E Morris, Rebecca Anderson, Victor Lim, Chong Chun Wie, Ivan Kok Seng Yap, Ahmed Ghazi Alattraqchi, Hafis Simin, Ramle Abdullah, Chew Chieng Yeo, Stuart C. Clarke and David W. Cleary
    Citation: BMC Genomics 2024 25:381
    Content type: Research Published on:

  17. Trombiculid mites are globally distributed, highly diverse arachnids that largely lack molecular resources such as whole mitogenomes for the elucidation of taxonomic relationships. Trombiculid larvae (chiggers...

    Authors: Hadil A. Alkathiry, Samia Q. Alghamdi, Amit Sinha, Gabriele Margos, Alexandr A. Stekolnikov, Abdulaziz N. Alagaili, Alistair C. Darby, Benjamin L. Makepeace and Jing Jing Khoo
    Citation: BMC Genomics 2024 25:380
    Content type: Research Published on:

  18. Tumor cells exhibit a heightened susceptibility to lysosomal-dependent cell death (LCD) compared to normal cells. However, the role of LCD-related genes (LCD-RGs) in Osteosarcoma (OS) remains unelucidated. Thi...

    Authors: Yueshu Wu, Jun Yang, Gang Xu, Xiaolin Chen and Xiaochen Qu
    Citation: BMC Genomics 2024 25:379
    Content type: Research Published on:

  21. Mycobacterium avium complex (MAC), including Mycobacterium intracellulare is a member of slow-growing mycobacteria and contributes to a substantial proportion of nontuberculous mycobacterial lung disease in human...

    Authors: Hyun-Eui Park, Kyu-Min Kim, Jeong-Ih Shin, Jeong-Gyu Choi, Won-Jun An, Minh Phuong Trinh, Kyeong-Min Kang, Jung-Wan Yoo, Jung-Hyun Byun, Myung Hwan Jung, Kon-Ho Lee, Hyung-Lyun Kang, Seung Cheol Baik, Woo-Kon Lee and Min-Kyoung Shin
    Citation: BMC Genomics 2024 25:376
    Content type: Research Published on:

  22. Approximately 95% of samples analyzed in univariate genome-wide association studies (GWAS) are of European ancestry. This bias toward European ancestry populations in association screening also exists for othe...

    Authors: Lucie Troubat, Deniz Fettahoglu, Léo Henches, Hugues Aschard and Hanna Julienne
    Citation: BMC Genomics 2024 25:375
    Content type: Research Published on:

  23. Fatty liver hemorrhagic syndrome (FLHS) in the modern poultry industry is primarily caused by nutrition. Despite encouraging progress on FLHS, the mechanism through which nutrition influences susceptibility to...

    Authors: Yong Cui, Meng Ru, Yujie Wang, Linjian Weng, Ramlat Ali Haji, Haiping Liang, Qingjie Zeng, Qing Wei, Xianhua Xie, Chao Yin and Jianzhen Huang
    Citation: BMC Genomics 2024 25:374
    Content type: Research Published on:

  24. The common dolphin (Delphinus delphis) is widely distributed worldwide and well adapted to various habitats. Animal genomes store clues about their pasts, and can reveal the genes underlying their evolutionary su...

    Authors: Kui Ding, Qinzeng Xu, Liyuan Zhao, Yixuan Li, Zhong Li, Wenge Shi, Qianhui Zeng, Xianyan Wang and Xuelei Zhang
    Citation: BMC Genomics 2024 25:373
    Content type: Research Published on:

  25. Alternative polyadenylation (APA), alternative splicing (AS), and long non-coding RNAs (lncRNAs) play regulatory roles in post-transcriptional processes in plants. However, little is known about their involvem...

    Authors: Nanbo Jiao, Jieru Xu, Yue Wang, Dunxi Li, Feifei Chen, Yu Chen and Jinhui Chen
    Citation: BMC Genomics 2024 25:372
    Content type: Research Published on:

  26. X-chromosome inactivation (XCI) is an epigenetic process that occurs during early development in mammalian females by randomly silencing one of two copies of the X chromosome in each cell. The preferential ina...

    Authors: Numrah Fadra, Laura E Schultz-Rogers, Pritha Chanana, Margot A Cousin, Erica L Macke, Alejandro Ferrer, Filippo Pinto e Vairo, Rory J Olson, Gavin R Oliver, Lindsay A Mulvihill, Garrett Jenkinson and Eric W Klee
    Citation: BMC Genomics 2024 25:371
    Content type: Research Published on:

  27. Quinoa (Chenopodium quinoa Willd.) is valued for its nutritional richness. However, pre-harvest sprouting poses a significant threat to yield and grain quality. This study aims to enhance our understanding of pre...

    Authors: Xiaoxue Zhao, Shiyu Wang, Fenggen Guo and Pan Xia
    Citation: BMC Genomics 2024 25:370
    Content type: Research Published on:

  28. Pigeon circovirus infections in pigeons (Columba livia domestica) have been reported worldwide. Pigeons should be PiCV-free when utilized as qualified experimental animals. However, pigeons can be freely purchase...

    Authors: Xiaobo Li, Shujing Wang, Wei Li, Shasha Wang, Xiao Qin, Ji Wang and Rui Fu
    Citation: BMC Genomics 2024 25:369
    Content type: Research Published on:

  30. The tissue damage caused by transient ischemic injury is an essential component of the pathogenesis of retinal ischemia, which mainly hinges on the degree and duration of interruption of the blood supply and t...

    Authors: Kai-Xiong Qing, Amy C. Y. Lo, Siduo Lu, You Zhou, Dan Yang and Di Yang
    Citation: BMC Genomics 2024 25:367
    Content type: Research Published on:

  31. Large-scale copy number variants (CNVs) are structural alterations in the genome that involve the duplication or deletion of DNA segments, contributing to genetic diversity and playing a crucial role in the ev...

    Authors: Zuzana Holesova, Ondrej Pös, Juraj Gazdarica, Marcel Kucharik, Jaroslav Budis, Michaela Hyblova, Gabriel Minarik and Tomas Szemes
    Citation: BMC Genomics 2024 25:366
    Content type: Research Published on:

  33. Pseudoalteromonas viridis strain BBR56 was isolated from seawater at Dutungan Island, South Sulawesi, Indonesia. Bacterial DNA was isolated using Promega Genomic DNA TM050. DNA purity and quantity were assessed u...

    Authors: Desy Putri Handayani, Alim Isnansetyo and Indah Istiqomah
    Citation: BMC Genomics 2024 25:364
    Content type: Research Published on:

  34. Cold hardiness is fundamental for amphibians to survive during the extremely cold winter on the Qinghai-Tibet plateau. Exploring the gene regulation mechanism of freezing-tolerant Rana kukunoris could help us to ...

    Authors: Tao Zhang, Lun Jia, Zhiyi Niu, Xinying Li, Shengkang Men, Lu Jiang, Miaojun Ma, Huihui Wang, Xiaolong Tang and Qiang Chen
    Citation: BMC Genomics 2024 25:363
    Content type: Research Published on:

  35. Rose is recognized as an important ornamental plant worldwide, and it is also one of the most widely used flowers in gardens. At present, the improvement of rose traits is still difficult and uncertain, and mo...

    Authors: Li Du, Xiaoling Kang, Haoran Guo, Zhongfeng Zhu, Rui Wu, Meijing Yuan and Chuanyu Ding
    Citation: BMC Genomics 2024 25:362
    Content type: Research Published on:

  36. Single-cell sequencing techniques are revolutionizing every field of biology by providing the ability to measure the abundance of biological molecules at a single-cell resolution. Although single-cell sequenci...

    Authors: Lucas Kuijpers, Bastian Hornung, Mirjam C. G. N. van den Hout - van Vroonhoven, Wilfred F. J. van IJcken, Frank Grosveld and Eskeatnaf Mulugeta
    Citation: BMC Genomics 2024 25:361
    Content type: Research Published on:

  37. During mitosis the cell depends on proper attachment and segregation of replicated chromosomes to generate two identical progeny. In cancers defined by overexpression or dysregulation of the MYC oncogene this pro...

    Authors: Sarah A. Streeter, Alexandria G. Williams, James R. Evans, Jing Wang, Alissa D. Guarnaccia, Andrea C. Florian, Rafet Al-Tobasei, Qi Liu, William P. Tansey and April M. Weissmiller
    Citation: BMC Genomics 2024 25:360
    Content type: Research Published on:

  38. Inherited hearing impairment is a remarkably heterogeneous monogenic condition, involving hundreds of genes, most of them with very small (< 1%) epidemiological contributions. The exception is GJB2, the gene enco...

    Authors: María Domínguez-Ruiz, Silvia Murillo-Cuesta, Julio Contreras, Marta Cantero, Gema Garrido, Belén Martín-Bernardo, Elena Gómez-Rosas, Almudena Fernández, Francisco J. del Castillo, Lluís Montoliu, Isabel Varela-Nieto and Ignacio del Castillo
    Citation: BMC Genomics 2024 25:359
    Content type: Research Published on:

  39. Hox gene family is an important transcription factor that regulates cell process, and plays a role in the process of adipocytes differentiation and fat deposition. Previous transcriptome sequencing studies hav...

    Authors: Lixia He, Xue Feng, Chunli Hu, Shuang Liu, Hui Sheng, Bei Cai and Yun Ma
    Citation: BMC Genomics 2024 25:358
    Content type: Research Published on:

  40. Broodiness significantly impacts poultry egg production, particularly notable in specific breeds such as the black-boned Silky, characterized by pronounced broodiness. An understanding of the alterations in ov...

    Authors: Yuting Tan, Yunyan Huang, Chunhui Xu, Xuan Huang, Shibao Li and Zhaozheng Yin
    Citation: BMC Genomics 2024 25:357
    Content type: Research Published on:

  41. Centromeres play a crucial and conserved role in cell division, although their composition and evolutionary history in green algae, the evolutionary ancestors of land plants, remains largely unknown.

    Authors: Bo Wang, Yanyan Jia, Ningxin Dang, Jie Yu, Stephen J. Bush, Shenghan Gao, Wenxi He, Sirui Wang, Hongtao Guo, Xiaofei Yang, Weimin Ma and Kai Ye
    Citation: BMC Genomics 2024 25:356
    Content type: Research Published on:

  42. Genetically modified (GM) crop plants with transgenic expression of Bacillus thuringiensis (Bt) pesticidal proteins are used to manage feeding damage by pest insects. The durability of this technology is threaten...

    Authors: Yangzhou Wang, Yao Yao, Yunyue Zhang, Xueyan Qian, Dongquan Guo and Brad S. Coates
    Citation: BMC Genomics 2024 25:355
    Content type: Research Published on:

  43. The homeodomain-leucine zipper (HD-Zip) gene family plays a pivotal role in plant development and stress responses. Nevertheless, a comprehensive characterization of the HD-Zip gene family in kiwifruit has bee...

    Authors: Kai-yu Ye, Jie-wei Li, Fa-ming Wang, Jian-you Gao, Cui-xia Liu, Hong-juan Gong, Bei-bei Qi, Ping-ping Liu, Qiao-sheng Jiang, Jian-min Tang and Quan-hui Mo
    Citation: BMC Genomics 2024 25:354
    Content type: Research Published on:

  44. Mosquitoes are prolific vectors of human pathogens, therefore a clear and accurate understanding of the organization of their antimicrobial defenses is crucial for informing the development of transmission con...

    Authors: Bretta Hixson, Louise Huot, Bianca Morejon, Xiaowei Yang, Peter Nagy, Kristin Michel and Nicolas Buchon
    Citation: BMC Genomics 2024 25:353
    Content type: Research Published on:

  45. Posterior capsular opacification (PCO) is the main reason affecting the long-term postoperative result of cataract patient, and it is well accepted that fibrotic PCO is driven by transforming growth factor bet...

    Authors: Cong Fan, Chao Wang, Yan Wang and Jian Jiang
    Citation: BMC Genomics 2024 25:352
    Content type: Research Published on:

  48. The fleece traits are important economic traits of goats. With the reduction of sequencing and genotyping cost and the improvement of related technologies, genomic selection for goats has become possible. The ...

    Authors: Xiaochun Yan, Jinquan Li, Libing He, Oljibilig Chen, Na Wang, Shuai Wang, Xiuyan Wang, Zhiying Wang and Rui Su
    Citation: BMC Genomics 2024 25:349
    Content type: Research Published on:

  49. Insecticide resistance (IR) is one of the major threats to malaria vector control programs in endemic countries. However, the mechanisms underlying IR are poorly understood. Thus, investigating gene expression...

    Authors: Helga Saizonou, Lucy Mackenzie Impoinvil, Dieunel Derilus, Diana Omoke, Stephen Okeyo, Nsa Dada, Claudia Corredor, Nicola Mulder, Audrey Lenhart, Eric Ochomo and Luc S. Djogbénou
    Citation: BMC Genomics 2024 25:348
    Content type: Research Published on:

  50. Mammalian follicle development is characterized by extensive changes in morphology, endocrine responsiveness, and function, providing the optimum environment for oocyte growth, development, and resumption of m...

    Authors: Lais Barbosa Latorraca, António Galvão, Maria Belen Rabaglino, Julieta Maria D’Augero, Gavin Kelsey and Trudee Fair
    Citation: BMC Genomics 2024 25:335
    Content type: Research Published on:

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BMC Genomics

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