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Table 1 Origin and characteristics of genotypes included in the 8 pools sequenced with SOLiD

From: Transcriptome sequencing for SNP discovery across Cucumis melo

Genotype/collection code

Origin

Collection

Flower and fruit traits

% Mapped reads

Number of processed reads a1

Subsp. agrestis

Pool 1: African agrestis

Tibish/CO199

Sudan

MELRIP

Mostly monoecious. Mostly small inedible fruits (<5 cm). Round to oval. Light green-white flesh. Non climacteric. No aroma. No sugar.

43.7

30,620,160

Fadasi/CO133

Sudan

MELRIP

  

HSD/CO145

Sudan

MELRIP

  

Tayer/CO195

Cameroon

MELRIP

  

Agrestis/CUM 287

Nigeria

IPK

   

Pool 2: Asian agrestis- acidulus

Agrestis Wild chibbar/CO204

India

COMAV

Monoecious. Small to medium sized fruits. Oval, elliptic to elongated. Mostly non climacteric. White-light orange flesh. No aroma. No sugar. Low pH.

56.7

15,779,803

Acidulus SLK/CO187

Sri Lanka

MELRIP

  

Agrestis Meloncito/CO153

India

COMAV

  

Acidulus TGR 1551/PI 482420

Zimbabwe

NPGS

  

Voatango/CO202

Madagascar

MELRIP

   

Arya/CO115

India

COMAV

   

Pool 3: Far East conomon

Pat81/CO32

Korea

COMAV

Andromonoecious-hermaphroditic. Medium sized fruits. Flat, round to elongated. White-green-light orange flesh. Non climacteric-medium climacteric. Medium aroma. Medium sugar.

56.1

17,962,640

Freemans´s Cucumber/CO136

Japan

COMAV

  

Songwhan Charmi/PI 161375

Korea

NPGS

  

Nabunkin/CO153

China

MELRIP

  

Paul/CO169

Poland

MELRIP

  

Intermediate types between subspecies

Pool 4: Middle East and Indian momordica, dudaim and flexuosus

Momordica/PI124112

India

NPGS

Andromonoecious-monoecious. Round, flat, oval to very elongated fruits. White-light orange flesh. Climacteric. No to intermediate sugar. Medium to strong aroma. Low pH.

55.3

23,320,668

Momordica/PI124111

India

NPGS

  

Momordica/CUM 438

India

IPK

  

Snakemelon/CO188

Saudi Arabia

MELRIP

  

Flexuosus/CUM 353

Iraq

IPK

   

Flexuosus/CUM 225

India

IPK

   

Dudaim Queen´s pocket melon/CO180

Afghanistan

COMAV

   

Subsp. melo

Pool 5: Group cantalupensis

Noy Israel/CO162

Israel

COMAV

Andromonoecious-monoecious- gynoecious. Medium to large size fruits. Flat to oval. Round or ribbed. Green- orange flesh. Climacteric. Sweet. Aromatic.

48.1

23,237,004

Noir des carmes/CO161

France

COMAV

  

Prescott Fond Blanc/CO179

France

COMAV

  

TopMARK/NSL30032

USA

NPGS

  

Nantais Oblong/CO159

France

MELRIP

   

Gynadou/CO141

France

MELRIP

   

Cantalupd´alger/CO121

France

MELRIP

   

PMR45/CO178

USA

MELRIP

   

5 Charentais breeding lines

Spain

S.Fitó S.A

   

Pool 6: Group melo Eastern Europe, Central Asia, inodorus, chandalack, ameri

Honeydew/CO143

USA

COMAV

Monoecious-andromonoecious. Medium-size fruits. Oval, flat to elongated. White-green-light orange flesh. Climacteric. Sweet, variable sugar content. Medium to low aroma.

34.3

8,367,385

Kirkagac/CO150

Turkey

COMAV

  

Muchanesvi/CO156

Georgia

MELRIP

  

Baskavas/CO118

Greece

MELRIP

  

Korca/Cum168

Rusia

IPK

  

Kiziluruk/CO96

Uzbequistan

COMAV

   

Hami melon/CO142

China

COMAV

   

Winter type/PI169329

Turkey

NPGS

   

Maazoon/CO85

Egypt

COMAV

   

Blanco/CO67

Spain

COMAV

   

Carosello/CO122

Italy

COMAV

   

Pool 7: inodorus Spanish landraces

Cañadulce/CO48

Spain

COMAV

Andromonoecious. Large-sized fruits. Round to elliptic. White-Green flesh. Non climacteric. Sweet. Low aroma.

50.6

17,485,023

Madura amarilla/CO58

Spain

COMAV

  

Erizo/CO75

Spain

COMAV

  

Amarillo oro/CO79

Spain

COMAV

  

Escrito oloroso/CO50

Spain

COMAV

  

Tendral/CO59

Spain

COMAV

   

Verde pinto/CO73

Spain

COMAV

   

Coca/CO49

Spain

COMAV

   

Mochuelo/CO48

Spain

COMAV

   

Largo de Villaconejos/CO69

Spain

COMAV

   

5 Amarillo breeding lines

Spain

S.Fitó S.A

   

Pool 8: inodorus group market class Piel de sapo

T111

Spain

S.Fitó S.A

Andromonoecious. Large-sized fruits. Round to elliptic. White-green flesh. Non climacteric. Sweet. No aroma.

37.2

13,809,773

5 Piel de Sapo breeding lines

Spain

S.Fitó S.A

  
  1. a1 Total number of reads and percentage of reads mapped on to the reference melon genome for SNP mining.
  2. Genotypes marked in bold letters are those used for SNP mining trough transcriptome resequencing with Sanger and 454 in previous assays[20, 21, 27]. Seed source codes: IPK: Institut ftir Pflanzengenetik und Kulturpflanzenforschung, Gatersleben, Germany; NPGS: GRIN NPGS, National Plant System, USDA, USA; MELRIP (2007–2010): ERA-PG project (GEN2006-27773-C2-2-E); COMAV, Institute for the Conservation and Breeding of Agricultural Biodiversity, UPV, Spain; Semillas Fitó S.A. (Barcelona).