Feature | KB-1 | DonnaII | ANAS |
---|---|---|---|
Type of sequencing | Sanger | 454 | 454 & Sanger |
Total number of bases pre-assembly | 106,515,530 | 930,446,714 | 330,964,688 |
Number of contigs | 6,361 | 47,030 | 10,807 |
Total length of contigs (bp) | 14,988,108 | 24,573,718 | 30,615,713 |
Number of singletons | 18,629 | 105,608 | 15,486 |
Total length of singletons (bp) | 13,487,233 | 57,708,799 | 10,450,264 |
Largest contig (bp) | 155,970 | 121,460 | 921,258 |
Average contig size (bp) | 2,356 | 522 | 2,832 |
Average G + C content (%) | 52.33 | 52.28 | 51.91 |
Protein coding genes | 40,766 | 194,527 | 60,992 |
- with COGs | 21,857 | 116,001 | 39,920 |
- connected to KEGG pathways | 8,077 | 36,685 | 11,878 |
rRNA genes (5 S/16 S/23 S) | 18 (7/5/6) | 185 (11/62/112) | 40 (23/8/9) |
tRNA genes | 330 | 818 | 525 |
CRISPR count | 48 | 7 | 57 |
MG-RAST data | Â | Â | Â |
% Dhc in culture* | 43.7 | 31.3 | 18.2 |
Metagenome size (bp)* | 106,508,248 | 916,191,214 | 330,396,345 |
Average read length* | 958 | 477 | 547 |
Number of sequences* | 111,162 | 1,920,396 | 603,841 |
Number (%) identified for metabolic analysis†| 63,352 (57.0) | 363,424 (18.9) | 222,012 (36.8) |
Number (%) identified for phylogenetic analysis†| 88,888 (80.0) | 540,785 (28.2) | 294,470 (48.8) |