Differential gene expression in the endometrium on gestation day 12 provides insight into sow prolificacy

BMC Genomics

Table 1 Major characteristics of DGE libraries and tag mapping to the integrated transcript database

	ER		LL
	Total Tags	Unique Tags	Total Tags	Unique Tags
Raw Data	3,723,534	400,769	5,791,223	493,761
Low Quality Tag	6,749	5,681	68,587	48,070
Adaptors¹	0	0	0	0
Tag CopyNum <2	268,612	268,612	225,643	225,643
Clean Tags	3,448,173	126,476	5,496,993	220,048
CopyNum > =2	3,448,173	126,476	5,496,993	220,048
CopyNum >5	3,225,291	45,507	5,124,374	87,931
CopyNum >10	3,102,559	29,281	4,884,200	56,377
CopyNum >20	2,944,609	18,456	4,552,034	33,675
CopyNum >50	2,659,626	9,541	3,950,181	14,721
CopyNum >100	2,352,245	5,212	3,399,787	6,871
3′ tag mapping
Tags Mapped to Gene²	3,279,258	98,673	4,218,582	159,029
Unambiguous Tags Mapped to Gene³	2,289,131	77,128	3,002,699	130,494
Tags Mapped to Mitochondrion	355	39	562	55
Tags Mapped to Genome	90,041	16,150	170,475	38,077
Unknown Tags	78,519	11,614	1,107,374	22,887

¹There is only adaptor but no tag sequence in the reads. ²Tag Mapped to Gene represents the number of tags mapped to the reference library. ³Unambiguous tags mapped to Gene represents the number of tags mapped to a gene in the reference library.

ISSN: 1471-2164