Table 3 Contribution of induced genes to functional categories
ORF DNA microarray | OligoDNA microarray | ||||||||
|---|---|---|---|---|---|---|---|---|---|
F > 2 & P < 0.05* | P < 0.01* | F > 2 & P < 0.05* | P < 0.01* | ||||||
Category subcategory | Total number in category | Number | %* | Number | % | Number | % | Number | % |
Metabolism | 1521 | 54 | 3.6 | 103 | 6.8 | 51 | 2.4 | 266 | 17.0 |
amino acid metabolism | 243 | 20 | 8.2 | 33 | 13.6 | 25 | 10.3 | 81 | 33.3 |
nitrogen and sulfur metabolism | 96 | 9 | 9.4 | 15 | 15.6 | 11 | 11.5 | 39 | 40.6 |
nucleotide metabolism | 227 | 6 | 2.6 | 12 | 5.3 | 2 | 0.9 | 22 | 9.7 |
phosphate metabolism | 414 | 7 | 1.7 | 15 | 3.6 | 6 | 1.4 | 55 | 13.3 |
C-compound and carbohydrate metabolism | 504 | 18 | 3.6 | 36 | 7.1 | 19 | 3.8 | 86 | 17.1 |
lipid, fatty acid and isoprenoid metabolism | 272 | 7 | 2.6 | 20 | 7.4 | 5 | 1.8 | 30 | 11.0 |
metabolism of vitamins, | 163 | 11 | 6.7 | 16 | 9.8 | 9 | 5.5 | 40 | 24.5 |
secondary metabolism | 77 | 4 | 5.2 | 7 | 9.1 | 4 | 5.2 | 19 | 24.7 |
ENERGY | 365 | 17 | 4.7 | 34 | 9.3 | 15 | 4.1 | 59 | 16.2 |
CELL CYCLE AND DNA PROCESSING | 1001 | 9 | 0.9 | 37 | 3.7 | 4 | 0.4 | 119 | 11.9 |
TRANSCRIPTION | 1063 | 10 | 0.9 | 39 | 3.7 | 9 | 0.8 | 87 | 8.2 |
PROTEIN SYNTHESIS | 476 | 3 | 0.6 | 20 | 4.2 | 1 | 0.2 | 8 | 1.7 |
PROTEIN FATE (folding, modification, destination) | 1137 | 23 | 2.0 | 65 | 5.7 | 8 | 0.7 | 159 | 14.0 |
PROTEIN WITH BINDING FUNCTION | 1034 | 22 | 2.1 | 54 | 5.2 | 15 | 1.5 | 134 | 13.0 |
PROTEIN ACTIVITY REGULATION | 238 | 2 | 0.8 | 6 | 2.5 | 1 | 0.4 | 23 | 9.7 |
CELLULAR TRANSPORT | 1031 | 33 | 3.2 | 74 | 7.2 | 18 | 1.7 | 131 | 12.7 |
CELLULAR COMMUNICATION | 234 | 1 | 0.4 | 4 | 1.7 | 1 | 0.4 | 28 | 12.0 |
CELL RESCUE, DEFENSE AND VIRULENCE | 548 | 31 | 5.7 | 47 | 8.6 | 28 | 5.1 | 118 | 21.5 |
INTERACTION WITH THE CELLULAR ENVIRONMEN | 458 | 16 | 3.5 | 28 | 6.1 | 9 | 2.0 | 71 | 15.5 |
INTERACTION WITH THE ENVIRONMENT | 5 | 0 | 0.0 | 0 | 0.0 | 0 | 0.0 | 1 | 20.0 |
TRANSPOSABLE ELEMENTS | 124 | 1 | 0.8 | 1 | 0.8 | 0 | 0.0 | 5 | 4.0 |
DEVELOPMENT (Systemic) | 70 | 1 | 1.4 | 4 | 5.7 | 0 | 0.0 | 7 | 10.0 |
BIOGENESIS OF CELLULAR COMPONENTS | 854 | 11 | 1.3 | 31 | 3.6 | 6 | 0.7 | 95 | 11.1 |
CELL TYPE DIFFERENTIATION | 449 | 3 | 0.7 | 18 | 4.0 | 2 | 0.4 | 48 | 10.7 |
UNCLASSIFIED PROTEINS | 2038 | 37 | 1.8 | 74 | 3.6 | 23 | 1.1 | 163 | 8.0 |
Total | 155 | 363 | 113 | 801 | |||||