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Aims and scope

BMC Genomics is an open access, peer-reviewed journal that considers articles on all aspects of genetics, genomics and proteomics.

BMC Genomics does not make editorial decisions on the basis of the interest of a study or its likely impact. Studies must be scientifically valid; for research articles this includes a scientifically sound research question, the use of suitable methods and analysis, and following community-agreed standards relevant to the research field.

Why publish your article in BMC Genomics?

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  • We welcome research from across the entire field of genetics and genomics, from studies on microorganisms to insights into human disease biology.
  • We're the home for the latest research, accessed by more than a million genomics researchers every year.
  • With nearly 3 million article accesses in 2021, publishing with BMC Genomics ensures high visibility for your article.

Open access

All articles published by BMC Genomics are made freely and permanently accessible online immediately upon publication, without subscription charges or registration barriers. Further information about open access can be found here

As authors of articles published in BMC Genomics you are the copyright holders of your article and have granted to any third party, in advance and in perpetuity, the right to use, reproduce or disseminate your article according to the licence terms

For those of you who are US government employees or are prevented from being copyright holders for similar reasons, BMC can accommodate non-standard copyright lines. Please contact us if further information is needed.

Data availability policy

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BMC Genomics follows the policies of the BMC journals, unless otherwise noted below which are designed to support our commitment to open data sharing.

Availability of datasets

Authors must deposit their datasets in an appropriate repository prior to peer review. If an appropriate repository does not exist, or if the available repositories do not support a confidential peer-review process, we ask authors to submit their data to a generalist repository such as figshare. A list of recommended repositories by subject area and data type can be found on the Springer Nature Recommended Repositories list. If you have questions as to the suitability of a given repository, please contact the helpdesk at researchdata@springernature.com. Authors may use reviewer access tokens at initial submission, but all datasets must be made public prior to acceptance.

If a dataset is not able to be deposited in any of the above repositories due to legal guidelines or ethical reasons, this must be clearly stated in the “Availability of Data and Materials” section and is subject to editor approval.

Data citation
BMC endorses the Force 11 Data Citation Principles and requires that all publicly available datasets be fully referenced in the reference list with an accession number or unique identifier such as a digital object identifier (DOI).

Authors are required to formally cite any datasets stored in external repositories that are mentioned within their manuscript, including the main datasets that are the focus of the submission, as well as any other datasets that have been used in the work. For previously published datasets, we ask authors to cite both the related research articles and the datasets themselves. All methods, software, and code developed for the manuscript should include a citation on the reference list. 

All Springer Nature journals, including BMC Genomics, are participants in the Initiative for Open Citations. As such, data citations are included in full in the formal reference list, exported to Crossref and are openly available.

An author list and title for the dataset should be included in the data citation, and should reflect the author(s) and dataset title recorded at the repository. If author or title is not recorded by the repository, these should not be included in the data citation. The name of the data-hosting repository, URL to the dataset and year the data were made available are required for all data citations. For DOI-based (e.g. figshare or Dryad) repositories the DOI URL should be used. For repositories using accessions (e.g. SRA or GEO) an identifiers.org URL should be used where available. Please refer to the following examples of data citation for guidance:

  • Zhang, Q-L., Chen, J-Y., Lin, L-B., Wang, F., Guo, J., Deng, X-Y. Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages. figshare https://doi.org/10.6084/m9.figshare.c.4064768.v3 (2018).
  • NCBI Sequence Read Archive https://identifiers.org/ncbi/insdc.sra:SRP121625 (2017).
  • Barbosa, P., Usie, A. and Ramos, A. M. Quercus suber isolate HL8, whole genome shotgun sequencing project. GenBank https://identifiers.org/ncbi/insdc:PKMF00000000 (2018).
  • DNA Data Bank of Japan https://trace.ddbj.nig.ac.jp/DRASearch/submission?acc=DRA004814 (2016).

Availability of computer code and software
Authors must make available upon request, to editors and reviewers, any previously unreported custom computer code or algorithm used to generate the data presented in the manuscript. If published, the software application/tool should be readily available to any scientist wishing to use it for non-commercial purposes, without restrictions (such as the need for a material transfer agreement). If the implementation is not made freely available, then the manuscript should focus clearly on the development of the underlying method and not discuss the tool in any detail.

A statement describing how software or custom code can be accessed must be included in the Declaration section “Availability of Data and Materials". License information for the software or method should also be stated clearly in the “Availability of Data and Materials section” and on the repository site.

This section should include a link to the most recent version of your software or code (e.g. GitHub or Sourceforge or Code Ocean) as well as a link to the archived version referenced in the manuscript. The software or code should be archived in an appropriate repository with a DOI or other unique identifier. For software in GitHub, we recommend using Zenodo

Code with an assigned DOI must be formally cited and listed in the References section of the manuscript.

Availability of research materials
BMC Genomics follows the BMC editorial policies for the sharing of research materials. 

Submission of a manuscript to a BMC journal implies that materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for non-commercial purposes. It is acceptable to request reasonable payment to cover costs of distribution and reagents may be made available via commercial or non-commercial third party providers. Any restrictions on materials availability, including if materials are to be distributed by a for-profit company, must be clearly stated in the paper. As per our policy on authorship responsibilities, it is expected that the corresponding author (or relevant designated authors) will be responsible for materials availability unless otherwise stated. 

Authors must include a materials availability statement under the “Availability of Data and Materials section”.

Study pre-registration
BMC Genomics encourages study pre-registration and pre-registration of analysis plans in public repositories; details of pre-registration should be provided in the manuscript.

Replication studies
BMC Genomics welcomes submission of replication studies that provide new insights into previously published results and will evaluate these submissions with the same editorial standards we apply to other submissions.

Standards of reporting
BMC Genomics advocates complete and transparent reporting of research and follows the BMC editorial policies on standards of reporting. Additional information is available through the journal’s submission guidelines.

Helpful resources for sharing your research data
We are committed to supporting researchers in sharing their research data, and getting the credit they deserve. Here are some useful resources to help:

Article processing charges (APC)

Authors who publish open access in BMC Genomics are required to pay an article processing charge (APC). The APC price will be determined from the date on which the article is accepted for publication.

The current APC, subject to VAT or local taxes where applicable, is: £2190.00/$2990.00/€2590.00*

*This journal is part of Springer Nature’s country-tiered APC pricing pilot. Find out more about the APC applicable to your country.

Visit our open access support portal and our Journal Pricing FAQs for further information.

Open access funding

Visit Springer Nature’s open access funding & support services for information about research funders and institutions that provide funding for APCs.

Springer Nature offers agreements that enable institutions to cover open access publishing costs. Learn more about our open access agreements to check your eligibility and discover whether this journal is included.

Requests for APC waivers and discounts from authors will be considered on a case-by-case basis, and may be granted in cases of financial need (see our open access policies for journals for more information). All applications for discretionary APC waivers and discounts should be made at the point of manuscript submission; requests made during the review process or after acceptance are unable to be considered.

Indexing services

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All articles published in BMC Genomics are included in:

  • ANVUR
  • BFI List
  • BIOSIS
  • Baidu
  • CAB Abstracts
  • CLOCKSS
  • CNKI
  • CNPIEC
  • Chemical Abstracts Service (CAS)
  • Chinese Academy of Sciences (CAS) - GoOA
  • DOAJ
  • Dimensions
  • EBSCO Academic Search
  • EBSCO Biomedical Reference Collection
  • EBSCO Discovery Service
  • EBSCO STM Source
  • EMBASE
  • EMBiology
  • Gale
  • Google Scholar
  • IFIS Publishing
  • Journal Citation Reports/Science Edition
  • Medline
  • Meta
  • Naver
  • OCLC WorldCat Discovery Service
  • Pathway Studio
  • Portico
  • ProQuest-ExLibris Primo
  • ProQuest-ExLibris Summon
  • PubMedCentral
  • Reaxys
  • SCImago
  • SCOPUS
  • Science Citation Index Expanded (SCIE)
  • TD Net Discovery Service
  • UGC-CARE List (India)
  • Wanfang
  • Zoological Record

The full text of all articles is deposited in digital archives around the world to guarantee long-term digital preservation. You can also access all articles published by BMC on SpringerLink.

Peer-review policy

Peer-review is the system used to assess the quality of a manuscript before it is published. Independent researchers in the relevant research area assess submitted manuscripts for originality, validity and significance to help editors determine whether the manuscript should be published in their journal. You can read more about the peer-review process here.

In cases where the journal is unable to find sufficient peer reviewers, the services of a publishing partner, American Journal Experts (AJE), may be used to identify suitable reviewers and provide reports to avoid further delays for authors. Reviewers recruited by AJE are paid a small honorarium for completing the review within a specified timeframe. Honoraria are paid regardless of the reviewer recommendation.

In cases where reports have been obtained by AJE, the peer review reports will be unsigned unless the reviewer opts in to sign the report.

BMC Genomics operates a transparent peer-review system, where, if the article is published, the reviewer reports are published online alongside the article under a Creative Commons Attribution License 4.0 but the reviewer is not named.

The benefit of transparent peer review is that it increases transparency. In addition, published reports can serve an educational purpose in helping facilitate training and research into peer review.

Manuscripts submitted to BMC Genomics are assessed by our editors and/or peer reviewers. Editor(s) are expected to obtain a minimum of two peer reviewers for manuscripts reporting primary research or secondary analysis of primary research. It is recognized that in some exceptional circumstances, particularly in niche and emerging fields, it may not be possible to obtain two independent peer reviewers. In such cases, Editor(s) may wish to make a decision to publish based on one peer review report. When making a decision based on one report, Editor(s) are expected to only do so if the peer review report meets the standards set out in the Springer Nature Code of Conduct (section Peer-Review). Overall editorial responsibility for the journal is with the Editor. Senior Editorial Board Members of BMC Genomics handle manuscripts in a broad range of topics within their general areas of expertise, in addition to advising on editorial board and journal development. The Senior Editorial Board is selected based on exceptional contributions to the journal. The Editorial Board Members manage the peer review process and make final decisions on whether papers should be accepted.

BMC Genomics is part of the BMC series which publishes subject-specific journals focused on the needs of individual research communities across all scientific and clinical disciplines. We do not make editorial decisions on the basis of the interest of a study or its likely impact. Studies must be scientifically valid; for research articles this includes a scientifically sound research question, the use of suitable methods and analysis, and following community-agreed standards relevant to the research field.

Specific criteria for other article types can be found in the submission guidelines.

BMC series - open, inclusive and trusted.

Collections and Special issues

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All articles submitted to Collections and Special issues are peer reviewed in line with the journal’s standard peer review policy and are subject to all of the journal’s standard editorial and publishing policies. This includes the journal’s policy on competing interests. The Editors declare no competing interests with the submissions which they have handled through the peer review process. The peer review of any submissions for which the Editors have competing interests is handled by another Editor who has no competing interests.

Editorial policies

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All manuscripts submitted to BMC Genomics should adhere to BMC's editorial policies.

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Appeals and complaints

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Authors who wish to appeal a rejection or make a complaint should follow the procedure outlined in the BMC Editorial Policies.

Citing articles in BMC Genomics

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Articles in BMC Genomics should be cited in the same way as articles in a traditional journal. Because articles are not printed, they do not have page numbers; instead, they are given a unique article number.

Article citations follow this format:

Authors: Title. BMC Genomics [year], [volume number]:[article number].

e.g. Roberts LD, Hassall DG, Winegar DA, Haselden JN, Nicholls AW, Griffin JL: Increased hepatic oxidative metabolism distinguishes the action of Peroxisome Proliferator-Activated Receptor delta from Peroxisome Proliferator-Activated Receptor gamma in the Ob/Ob mouse. BMC Genomics 2009, 1:115.

refers to article 115 from Volume 1 of the journal.

Benefits of publishing with BMC

High visibility

BMC Genomics's open access policy allows maximum visibility of articles published in the journal as they are available to a wide, global audience. 

Speed of publication

BMC Genomics offers a fast publication schedule whilst maintaining rigorous peer review; all articles must be submitted online, and peer review is managed fully electronically (articles are distributed in PDF form, which is automatically generated from the submitted files). Articles will be published with their final citation after acceptance, in both fully browsable web form, and as a formatted PDF.

Flexibility

Online publication in BMC Genomics gives you the opportunity to publish large datasets, large numbers of color illustrations and moving pictures, to display data in a form that can be read directly by other software packages so as to allow readers to manipulate the data for themselves, and to create all relevant links (for example, to PubMed, to sequence and other databases, and to other articles).

Promotion and press coverage

Articles published in BMC Genomics are included in article alerts and regular email updates. Some may be highlighted on BMC Genomics’s pages and on the BMC homepage.

In addition, articles published in BMC Genomics may be promoted by press releases to the general or scientific press. These activities increase the exposure and number of accesses for articles published in BMC Genomics. A list of articles recently press-released by journals published by BMC is available here.

Copyright

As an author of an article published in Cancer & Metabolism you retain the copyright of your article and you are free to reproduce and disseminate your work. For further information, see our guide to licensing, copyright and author rights

For further information about the advantages of publishing in a journal from BMC, please click here.

Annual Journal Metrics

  • Citation Impact 2023
    Journal Impact Factor: 3.5
    5-year Journal Impact Factor: 4.1
    Source Normalized Impact per Paper (SNIP): 1.083
    SCImago Journal Rank (SJR): 1.047

    Speed 2023
    Submission to first editorial decision (median days): 21
    Submission to acceptance (median days): 137

    Usage 2023
    Downloads: 7,167,242
    Altmetric mentions: 4,454

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