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  2. Acinetobacter calcoaceticus-A. baumannii (ACB) complex pathogens are known for their prevalence in nosocomial infections and extensive antimicrobial resistance (AMR) capabilities. While genomic studies worldwide...

    Authors: Aura Rahman, Ashley Styczynski, Abdul Khaleque, Sakib Abrar Hossain, Abdus Sadique, Arman Hossain, Mukesh Jain, Syeda Naushin Tabassum, Fahad Khan, Mohammad Sami Salman Bhuiyan, Jahidul Alam, Amith Khandakar, Mohammad Kamruzzaman, Chowdhury Rafiqul Ahsan, Saad Bin Abul Kashem, Muhammad E. H. Chowdhury…
    Citation: BMC Genomics 2022 23:802
    Content type: Research Published on:

  3. Aquatic animals show diverse body coloration, and the formation of animal body colour is a complicated process. Increasing evidence has shown that microRNAs (miRNAs) play important regulatory roles in many lif...

    Authors: Pei Wang, Gang Xiong, Dan Zeng, Jianguo Zhang, Lingrui Ge, Li Liu, Xiaoqing Wang and Yazhou Hu
    Citation: BMC Genomics 2022 23:801
    Content type: Research Published on:

  4. Seagrasses are higher marine flowering plants that evolved from terrestrial plants, but returned to the sea during the early evolution of monocotyledons through several separate lineages. Thus, they become a g...

    Authors: Jun Chen, Yu Zang, Shuo Liang, Song Xue, Shuai Shang, Meiling Zhu, Ying Wang and Xuexi Tang
    Citation: BMC Genomics 2022 23:800
    Content type: Research Published on:

  7. Cetacean hindlimbs were lost and their forelimb changed into flippers characterized by webbed digits and hyperphalangy, thus allowing them to adapt to a completely aquatic environment. However, the underlying ...

    Authors: Linxia Sun, Xinghua Rong, Xing Liu, Zhenpeng Yu, Qian Zhang, Wenhua Ren, Guang Yang and Shixia Xu
    Citation: BMC Genomics 2022 23:797
    Content type: Research Published on:

  8. Calcareous outcrops, rocky areas composed of calcium carbonate (CaCO3), often host a diverse, specialized, and threatened biomineralizing fauna. Despite the repeated evolution of physiological and morphological a...

    Authors: T. Mason Linscott, Andrea González-González, Takahiro Hirano and Christine E. Parent
    Citation: BMC Genomics 2022 23:796
    Content type: Research Published on:

  9. Texture quality is impotent for melon (Cucumis melo L.) fruit. β-galactosidase (β-Gal, EC 3.2.1.23) is an important cell wall glycosyl hydrolase involved in fruit softening, However, the β-Gal gene (BGALs) family...

    Authors: Haobin Pan, Yinhan Sun, Miaomiao Qiao and Hongyan Qi
    Citation: BMC Genomics 2022 23:795
    Content type: Research Published on:

  10. Dicranostigma leptopodum (Maxim.) Fedde is a perennial herb with bright yellow flowers, well known as "Hongmao Cao" for its medicinal properties, and is an excellent early spring flower used in urban greening. Ho...

    Authors: Lei Wang, Fuxing Li, Ning Wang, Yongwei Gao, Kangjia Liu, Gangmin Zhang and Jiahui Sun
    Citation: BMC Genomics 2022 23:794
    Content type: Research Published on:

  11. Fruit flies (Diptera: Tephritidae) comprise species of agricultural and economic importance. Five such fruit fly species are known to affect commercial fruit production and export in South Africa: Ceratitis capit...

    Authors: Kelsey J Andrews, Rachelle Bester, Aruna Manrakhan and Hans J Maree
    Citation: BMC Genomics 2022 23:793
    Content type: Research Published on:

  12. Somatic mutations drive colorectal cancer (CRC) by disrupting gene regulatory mechanisms. Distinct combinations of mutations can result in unique changes to regulatory mechanisms leading to variability in the ...

    Authors: Jonathan W. Villanueva, Lawrence Kwong, Teng Han, Salvador Alonso Martinez, Michael T. Shanahan, Matt Kanke, Lukas E. Dow, Charles G. Danko and Praveen Sethupathy
    Citation: BMC Genomics 2022 23:792
    Content type: Research Published on:

  13. The high-affinity K+ transporter (HAK) family plays a vital role in K+ uptake and transport as well as in salt and drought stress responses. In the present study, we identified 22 HAK genes in each Medicago trunc...

    Authors: Qian Li, Wenxuan Du, Xinge Tian, Wenbo Jiang, Bo Zhang, Yuxiang Wang and Yongzhen Pang
    Citation: BMC Genomics 2022 23:791
    Content type: Research Published on:

  14. Excessive deposition of abdominal fat poses serious problems in broilers owing to rapid growth. Recently, the evolution of the existing knowledge on long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) ...

    Authors: Yang Jing, Bohan Cheng, Haoyu Wang, Xue Bai, Qi Zhang, Ning Wang, Hui Li and Shouzhi Wang
    Citation: BMC Genomics 2022 23:790
    Content type: Research Published on:

  15. The exact mechanism of atrial fibrillation (AF)-induced heart failure (HF) remains unclear. Proteomics and metabolomics were integrated to in this study, as to describe AF patients’ dysregulated proteins and m...

    Authors: Haiyu Zhang, Lu Wang, Dechun Yin, Qi Zhou, Lin Lv, Zengxiang Dong and Yuanqi Shi
    Citation: BMC Genomics 2022 23:789
    Content type: Research Published on:

  16. 17 Y-chromosomal STRs which are part of the Yfiler Amplification Kit were investigated in 493 unrelated Pakistani individuals belonging to the Punjabi, Sindhi, Baloch, and Pathan ethnic groups. We have assesse...

    Authors: Muhammad Salman Ikram, Tahir Mehmood, Allah Rakha, Sareen Akhtar, Muhammad Imran Mahmood Khan, Wedad Saeed Al-Qahtani, Fatmah Ahmed Safhi, Sibte Hadi, Chuan-Chao Wang and Atif Adnan
    Citation: BMC Genomics 2022 23:788
    Content type: Research Published on:

  17. Sitting at the interface of gene expression and host-pathogen interaction, polymerase associated factor 1 complex (PAF1C) is a rising player in the innate immune response. The complex localizes to the nucleus ...

    Authors: Matthew W. Kenaston, Oanh H. Pham, Marine J. Petit and Priya S. Shah
    Citation: BMC Genomics 2022 23:787
    Content type: Research Published on:

  18. Average backfat thickness (BFT) is a critical complex trait in pig and an important indicator for fat deposition and lean rate. Usually, genome-wide association study (GWAS) was used to discover quantitative trai...

    Authors: Haonan Zeng, Zhanming Zhong, Zhiting Xu, Jinyan Teng, Chen Wei, Zitao Chen, Wenjing Zhang, Xiangdong Ding, Jiaqi Li and Zhe Zhang
    Citation: BMC Genomics 2022 23:786
    Content type: Research Published on:

  20. Climate change will result in more frequent droughts that can impact soil-inhabiting microbiomes (rhizobiomes) in the agriculturally vital North American perennial grasslands. Rhizobiomes have contributed to e...

    Authors: Soumyadev Sarkar, Abigail Kamke, Kaitlyn Ward, Eli Hartung, Qinghong Ran, Brandi Feehan, Matthew Galliart, Ari Jumpponen, Loretta Johnson and Sonny T.M. Lee
    Citation: BMC Genomics 2022 23:784
    Content type: Research article Published on:

  21. DBA/1 mice have a higher susceptibility to generalized audiogenic seizures (AGSz) and seizure-induced respiratory arrest (S-IRA) than C57/BL6 mice. The gene expression profile might be potentially related to t...

    Authors: Lina Zhu, Deng Chen, Xin Lin and Ling Liu
    Citation: BMC Genomics 2022 23:783
    Content type: Research Published on:

  22. The identification of gene regulatory networks (GRNs) facilitates the understanding of the underlying molecular mechanism of various biological processes and complex diseases. With the availability of single-c...

    Authors: Jinting Guan, Yang Wang, Yongjie Wang, Yan Zhuang and Guoli Ji
    Citation: BMC Genomics 2022 23:782
    Content type: Software Published on:

  23. Long noncoding RNAs (lncRNAs) are a diverse class of RNAs that are critical for gene regulation, DNA repair, and splicing, and have been implicated in development, stress response, and cancer. However, the fun...

    Authors: Rebecca A. MacPherson, Vijay Shankar, Lakshmi T. Sunkara, Rachel C. Hannah, Marion R. Campbell III, Robert R. H. Anholt and Trudy F. C. Mackay
    Citation: BMC Genomics 2022 23:781
    Content type: Research article Published on:

  24. Important regulation occurs at the level of transcription in Plasmodium falciparum and growing evidence suggests that these apicomplexan parasites have complex regulatory networks. Recent studies implicate long n...

    Authors: Johanna Hoshizaki, Sophie H. Adjalley, Vandana Thathy, Kim Judge, Matthew Berriman, Adam J. Reid and Marcus C. S. Lee
    Citation: BMC Genomics 2022 23:780
    Content type: Research Published on:

  25. The brown adipose tissue (BAT) is a target for treating obesity. BAT losses thermogenic capacity and gains a “white adipose tissue-like” phenotype (“BAT whitening”) under thermoneutral environments, which is a...

    Authors: Kun Du, Xue Bai, Li Chen, Yu Shi, Hao-ding Wang, Ming-cheng Cai, Wen-qiang Sun, Jie Wang, Shi-yi Chen, Xian-bo Jia and Song-jia Lai
    Citation: BMC Genomics 2022 23:779
    Content type: Research Published on:

  26. Cadmium (Cd) is a highly toxic pollutant in soil and water that severely hampers the growth and reproduction of plants. Phytoremediation has been presented as a cost-effective and eco-friendly method for addre...

    Authors: Chenchen Gan, Zhaochao Liu, Biao Pang, Dan Zuo, Yunyan Hou, Lizhou Zhou, Jie Yu, Li Chen, Hongcheng Wang, Lei Gu, Xuye Du, Bin Zhu and Yin Yi
    Citation: BMC Genomics 2022 23:778
    Content type: Research Published on:

  27. Bacteriophages are widely considered to be highly abundant and genetically diverse, with their role in the evolution and virulence of many pathogens becoming increasingly clear. Less attention has been paid on...

    Authors: Steven Batinovic, Cassandra R. Stanton, Daniel T. F. Rice, Brittany Rowe, Michael Beer and Steve Petrovski
    Citation: BMC Genomics 2022 23:777
    Content type: Research Published on:

  28. Plant mitogenomes vary widely in size and genomic architecture. Although hundreds of plant mitogenomes of angiosperm species have already been sequence-characterized, only a few mitogenomes are available from ...

    Authors: Birgit Kersten, Christian Rellstab, Hilke Schroeder, Sabine Brodbeck, Matthias Fladung, Konstantin V. Krutovsky and Felix Gugerli
    Citation: BMC Genomics 2022 23:776
    Content type: Research Published on:

  29. Infectious Salmon Anaemia virus (ISAV) is an orthomyxovirus responsible for large losses in Atlantic salmon (Salmo salar) aquaculture. Current available treatments and vaccines are not fully effective, and theref...

    Authors: Ophélie Gervais, Athina Papadopoulou, Remi Gratacap, Borghild Hillestad, Alan E. Tinch, Samuel A. M. Martin, Ross D. Houston and Diego Robledo
    Citation: BMC Genomics 2022 23:775
    Content type: Research Published on:

  30. Potential functional variants (PFVs) can be defined as genetic variants responsible for a given phenotype. Ultimately, these are the best DNA markers for animal breeding and selection, especially for polygenic...

    Authors: Gabriela Ribeiro, Fernando Baldi, Aline S. M. Cesar, Pâmela A. Alexandre, Elisa Peripolli, José B. S. Ferraz and Heidge Fukumasu
    Citation: BMC Genomics 2022 23:774
    Content type: Research Published on:

  31. Squamous promoter binding protein-like (SPL) proteins are a class of transcription factors that play essential roles in plant growth and development, signal transduction, and responses to biotic and abiotic st...

    Authors: Yanyan Ren, Rui Ma, Yue Fan, Bingjie Zhao, Peng Cheng, Yu Fan and Baotong Wang
    Citation: BMC Genomics 2022 23:773
    Content type: Research Published on:

  32. The transcriptional changes around zygotic genome activation (ZGA) in preimplantation embryos are critical for studying mechanisms of embryonic developmental arrest and searching for key transcription factors....

    Authors: Yanhui Zhai, Hao Yu, Xinglan An, Zhiren Zhang, Meng Zhang, Sheng Zhang, Qi Li and Ziyi Li
    Citation: BMC Genomics 2022 23:772
    Content type: Research Published on:

  33. Pre-harvest sprouting (PHS) is one of the most serious rice production constraints in areas where prolonged rainfall occurs during harvest. However, the molecular mechanisms of transcriptional regulation under...

    Authors: Dong Liu, Mingyang Zeng, Yan Wu, Yanli Du, Jianming Liu, Shaoqiang Luo and Yongjun Zeng
    Citation: BMC Genomics 2022 23:771
    Content type: Research Published on:

  34. Although knowledge of the sizes, contents, and forms of plant mitochondrial genomes (mitogenomes) is increasing, little is known about the mechanisms underlying their structural diversity. Evolutionary informa...

    Authors: Lei Wei, Tong-Jian Liu, Gang Hao, Xue-Jun Ge and Hai-Fei Yan
    Citation: BMC Genomics 2022 23:770
    Content type: Research Published on:

  35. Most susceptible loci of hepatocellular carcinoma (HCC) identified by genome-wide association studies (GWAS) are located in non-coding regions, and the mechanism of action remains unclear. The objective of thi...

    Authors: Han Mo, Xi Wang, Guohua Ji, Xiao Liang, Yi Yang, Wenjing Sun, Xueyuan Jia, Lidan Xu, Yuandong Qiao, Henan Zhou, Wenhui Zhao, Songbin Fu and Xuelong Zhang
    Citation: BMC Genomics 2022 23:769
    Content type: Research Published on:

  36. Mycobacterium avium subsp. paratuberculosis (MAP) is the causative agent of paratuberculosis. As a potential zoonotic pathogen, MAP also seriously threatens human health and social security. At present, long non-...

    Authors: Yanhong Bao, Shuiyin Wu, Tianze Yang, Zi Wang, Yiming Wang, Xiuyun Jiang and Hongxia Ma
    Citation: BMC Genomics 2022 23:768
    Content type: Research Published on:

  37. Maize-infecting viruses are known to inflict significant agronomic yield loss throughout the world annually. Identification of known or novel causal agents of disease prior to outbreak is imperative to preserv...

    Authors: Ryan R. Lappe, Manjula G. Elmore, Zachary R. Lozier, Georg Jander, W. Allen Miller and Steven A. Whitham
    Citation: BMC Genomics 2022 23:767
    Content type: Research Published on:

  38. Elucidating the phylogenetic relationships within species-rich genera is essential but challenging, especially when lineages are assumed to have been going through radiation events. Mahonia Nutt. (Berberidaceae) ...

    Authors: Ruchang Tong, Chaoxia Gui, Yu Zhang, Na Su, Xiaoqi Hou, Meng Liu, Zhaoping Yang, Bing Kang, Zhaoyang Chang, Florian Jabbour and Liang Zhao
    Citation: BMC Genomics 2022 23:766
    Content type: Research Published on:

  39. The first metazoan genome sequenced, that of Caenorhabditis elegans, has motivated animal genome evolution studies. To date > 50 species from the genus Caenorhabditis have been sequenced, allowing research on gen...

    Authors: Simo Sun, Natsumi Kanzaki, Mehmet Dayi, Yasunobu Maeda, Akemi Yoshida, Ryusei Tanaka and Taisei Kikuchi
    Citation: BMC Genomics 2022 23:765
    Content type: Research Published on:

  40. Rectal cancer (RC) is one of the most common malignant tumors. Ferroptosis is an iron-dependent form of cell death, which plays an important role in various cancers. However, the correlation between ferroptosi...

    Authors: Wei-Kun Shi, Yu-Xin Liu, Xiao-Yuan Qiu, Jing-Ya Zhou, Jiao-Lin Zhou and Guo-Le Lin
    Citation: BMC Genomics 2022 23:764
    Content type: Research Published on:

  41. The Kurds as an ethnic group are believed to be a combination of earlier Indo-European tribes who migrated and inhabited a mountainous area thousands of years ago. However, as it is difficult to describe the p...

    Authors: Balnd M. Albarzinji, Farhad M. Abdulkarim, Shaho A. Hussein, Dlshad Rashid and Hayder Lazim
    Citation: BMC Genomics 2022 23:763
    Content type: Research article Published on:

  42. Older adults are more prone to develop systemic dehydration. Systemic dehydration has implications for vocal fold biology by affecting gene and protein expression. The objective of this study was to quantify v...

    Authors: Naila C. do Nascimento, Taylor W. Bailey, Andrea P. Santos, Chenwei Duan, Rodrigo Mohallem, Jackeline Franco, Uma K. Aryal, Jun Xie, Abigail Cox and M. Preeti Sivasankar
    Citation: BMC Genomics 2022 23:762
    Content type: Research Published on:

  43. Protoporphyrin IX (Pp IX) is the primary pigment for brown eggshells. However, the regulatory mechanisms directing Pp IX synthesis, transport, and genetic regulation during eggshell calcification in chickens r...

    Authors: Jing Yang, Zhiqiong Mao, Xiqiong Wang, Jingjie Zhuang, Sijia Gong, Zhouyang Gao, Guiyun Xu, Ning Yang and Congjiao Sun
    Citation: BMC Genomics 2022 23:761
    Content type: Research Published on:

  44. Retained placenta (RP) is a prevalent disorder in cattle with many health-related and economic costs for the farm owners. Its etiology has not been clarified yet and there is no definite therapy for this disor...

    Authors: Mehdi Moradi, Mahdi Zhandi, Mohsen Sharafi, Arvand Akbari, Mohammad Jafari Atrabi and Mehdi Totonchi
    Citation: BMC Genomics 2022 23:760
    Content type: Research Published on:

  45. The cold pressor test (CPT) is a widely used pain provocation test to investigate both pain tolerance and cardiovascular responses. We hypothesize, that performing multi-omic analyses during CPT gives the oppo...

    Authors: Lisette J. A. Kogelman, Madeleine Ernst, Katrine Falkenberg, Gianluca Mazzoni, Julie Courraud, Li Peng Lundgren, Susan Svane Laursen, Arieh Cohen, Jes Olesen and Thomas Folkmann Hansen
    Citation: BMC Genomics 2022 23:759
    Content type: Research Published on:

  47. Hemiptera is one of the most speciose orders of insects, and the most speciose considering Hemimetabola. Through their evolutive history, hemipterans with different feeding habits have adapted to deal with dif...

    Authors: Mariano Volonté, Lucila Traverso, Jose Manuel Latorre Estivalis, Francisca Cunha Almeida and Sheila Ons
    Citation: BMC Genomics 2022 23:757
    Content type: Research Published on:

  49. Since inception of the COVID-19 pandemic, early detection and isolation of positive cases is one of the key strategies to restrict disease transmission. Real time reverse transcription polymerase chain reactio...

    Authors: Swati Gupta, Amit Kumar, Nivedita Gupta, Deepak R. Bharti, Neeraj Aggarwal and Vasanthapuram Ravi
    Citation: BMC Genomics 2022 23:755
    Content type: Research Published on:

  50. Although a number of imprinted genes are known to be highly expressed in the brain, and in certain brain regions in particular, whether they are truly over-represented in the brain has never been formally test...

    Authors: M. J. Higgs, M. J. Hill, R. M. John and A. R. Isles
    Citation: BMC Genomics 2022 23:754
    Content type: Research Published on:

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