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  1. The characteristic pink-reddish color in the salmonids fillet is an important, appealing quality trait for consumers and producers. The color results from diet supplementation with carotenoids, which accounts ...

    Authors: Ridwan O. Ahmed, Ali Ali, Tim Leeds and Mohamed Salem
    Citation: BMC Genomics 2023 24:579
    Content type: Research Published on:

  2. Y-STR polymorphisms are useful in tracing genealogy and understanding human origins and migration history. This study aimed to fill a knowledge gap in the genetic diversity, structure, and haplogroup distribut...

    Authors: Wenqian Song, Shihang Zhou, Weijian Yu, Yaxin Fan and Xiaohua Liang
    Citation: BMC Genomics 2023 24:578
    Content type: Research Published on:

  3. The mechanism underlying cognitive impairment after hearing loss (HL) remains unclear. N6-methyladenosine (m6A) is involved in many neurodegenerative diseases; however, its role in cognitive impairment after H...

    Authors: Xuehua Zhou, Lin Jin, Yufeng Li, Yiru Wang, Wen Li and Xia Shen
    Citation: BMC Genomics 2023 24:577
    Content type: Research Published on:

  4. Spinal Muscular Atrophy (SMA) and Amyotrophic Lateral Sclerosis (ALS) share phenotypic and molecular commonalities, including the fact that they can be caused by mutations in ubiquitous proteins involved in RN...

    Authors: Marina L. Garcia-Vaquero, Marjorie Heim, Barbara Flix, Marcelo Pereira, Lucile Palin, Tânia M. Marques, Francisco R. Pinto, Javier de Las Rivas, Aaron Voigt, Florence Besse and Margarida Gama-Carvalho
    Citation: BMC Genomics 2023 24:576
    Content type: Research Published on:

  5. Comparative genomics is the comparison of genetic information within and across organisms to understand the evolution, structure, and function of genes, proteins, and non-coding regions (Sivashankari and Shanm...

    Authors: Kristin Bornstein, Gary Gryan, E. Sally Chang, Aron Marchler-Bauer and Valerie A. Schneider
    Citation: BMC Genomics 2023 24:575
    Content type: Review Published on:

  6. Super-enhancers (SEs), which activate genes involved in cell-type specificity, have mainly been defined as genomic regions with top-ranked enrichment(s) of histone H3 with acetylated K27 (H3K27ac) and/or trans...

    Authors: Nando D. Das, Jen-Chien Chang, Chung-Chau Hon, S. Thomas Kelly, Shinsuke Ito, Marina Lizio, Bogumil Kaczkowski, Hisami Watanabe, Keisuke Katsushima, Atsushi Natsume, Haruhiko Koseki, Yutaka Kondo, Aki Minoda and Takashi Umehara
    Citation: BMC Genomics 2023 24:574
    Content type: Research Published on:

  7. Understanding the genomic features of livestock is essential for successful breeding programs and conservation. This information is scarce for local goat breeds in Egypt. In the current study, genomic regions ...

    Authors: Ahmed M. Sallam, Henry Reyer, Klaus Wimmers, Francesca Bertolini, Adel Aboul-Naga, Camila U. Braz and Alaa Emara Rabee
    Citation: BMC Genomics 2023 24:573
    Content type: Research Published on:

  8. Telomeres are the nucleoprotein complexes that physically cap the ends of eukaryotic chromosomes. Most plants possess Arabidopsis-type telomere sequences (TSs). In addition to terminal TSs, more diverse interstit...

    Authors: Alexander Belyayev, Ruslan Kalendar, Jiřina Josefiová, Ladislava Paštová, Farzaneh Habibi, Václav Mahelka, Bohumil Mandák and Karol Krak
    Citation: BMC Genomics 2023 24:572
    Content type: Research Published on:

  9. Malvaceae is an economically important plant family of 4,225 species in nine subfamilies. Phylogenetic relationships among the nine subfamilies have always been controversial, especially for Brownlowioideae, w...

    Authors: Mingsong Wu, Liu He, Guangyao Ma, Kai Zhang, Haijian Yang and Xinquan Yang
    Citation: BMC Genomics 2023 24:571
    Content type: Research Published on:

  10. The eight phenotypically distinguishable indigenous chicken breeds in Guizhou province of China are great resources for high-quality development of the poultry industry in China. However, their full value and ...

    Authors: Dan Xu, Wei Zhu, Youhao Wu, Shuo Wei, Gang Shu, Yaofu Tian, Xiaohui Du, Jigao Tang, Yulong Feng, Gemin Wu, Xue Han and Xiaoling Zhao
    Citation: BMC Genomics 2023 24:570
    Content type: Research Published on:

  11. Developing genomic resources for a diverse range of species is an important step towards understanding the mechanisms underlying complex traits. Specifically, organisms that exhibit unique and accessible pheno...

    Authors: Samantha K. Smith, Paul W. Frazel, Alireza Khodadadi-Jamayran, Paul Zappile, Christian Marier, Mariam Okhovat, Stuart Brown, Michael A. Long, Adriana Heguy and Steven M. Phelps
    Citation: BMC Genomics 2023 24:569
    Content type: Research Published on:

  12. Mammals are potential hosts for many infectious diseases. However, studies on the viral communities of herbivorous mammals in the Northwest Plateau are limited. Here, we studied the viral communities of herbiv...

    Authors: Jiamin Pan, Likai Ji, Haisheng Wu, Xiaochun Wang, Yan Wang, Yan Wu, Shixing Yang, Quan Shen, Yuwei Liu, Wen Zhang, Keshan Zhang and Tongling Shan
    Citation: BMC Genomics 2023 24:568
    Content type: Research Published on:

  13. Metabolic-dysfunction-associated fatty liver disease (MAFLD) is a comorbidity that generally increases in people living with HIV (PLWH). This condition is usually accompanied by persistent inflammation and pre...

    Authors: Elena Moreno, Javier Martínez-Sanz, Rosa Martín-Mateos, Jorge Díaz-Álvarez, Sergio Serrano-Villar, Diego Burgos-Santamaría, Laura Luna, María Jesús Vivancos, Ana Moreno-Zamora, María Jesús Pérez-Elías, Santiago Moreno, Fernando Dronda, María Luisa Montes and Matilde Sánchez-Conde
    Citation: BMC Genomics 2023 24:567
    Content type: Research Published on:

  14. Olive oil contains monounsaturated oleic acid up to 83% and phenolic compounds, making it an excellent source of fat. Due to its economic importance, the quantity and quality of olive oil should be improved in...

    Authors: AliAkbar Asadi, Vahid Shariati, Soraya Mousavi, Roberto Mariotti and Mehdi Hosseini Mazinani
    Citation: BMC Genomics 2023 24:566
    Content type: Research Published on:

  15. The vaginal microenvironment of healthy women has a predominance of Lactobacillus crispatus, L. iners, L. gasseri, and L. jensenii. The genomic repertoire of the strains of each of the species associated with the...

    Authors: Anupam Bhattacharya, Sushmita Das, Maloyjo Joyraj Bhattacharjee, Ashis K. Mukherjee and Mojibur Rohman Khan
    Citation: BMC Genomics 2023 24:565
    Content type: Research Published on:

  16. While numerous studies have described the transcriptomes of extracellular vesicles (EVs) in different cellular contexts, these efforts have typically relied on sequencing methods requiring RNA fragmentation, w...

    Authors: Juan-Carlos A. Padilla, Seda Barutcu, Ludovic Malet, Gabrielle Deschamps-Francoeur, Virginie Calderon, Eunjeong Kwon and Eric Lécuyer
    Citation: BMC Genomics 2023 24:564
    Content type: Research Published on:

  17. Ovarian development is an important prerequisite and basis for animal reproduction. In many vertebrates, it is regulated by multiple genes and influenced by sex steroid hormones and environmental factors. Howe...

    Authors: Wenjing Wang, Biao Wu, Zhihong Liu, Xiujun Sun, Liqing Zhou, Wandong Xu, Tao Yu, Yanxin Zheng and Shihao Zhang
    Citation: BMC Genomics 2023 24:563
    Content type: Research Published on:

  18. Selective constraint, the depletion of variation due to negative selection, provides insights into the functional impact of variants and disease mechanisms. However, its characterization in mice, the most comm...

    Authors: George Powell, Michelle M. Simon, Sara Pulit, Ann-Marie Mallon and Cecilia M. Lindgren
    Citation: BMC Genomics 2023 24:562
    Content type: Research Published on:

  19. The mitochondria are central in the cellular response to changing environmental conditions resulting from disease states, environmental exposures or normal physiological processes. Although the influences of e...

    Authors: John Lees, Fábio Pèrtille, Pia Løtvedt, Per Jensen and Carlos Guerrero Bosagna
    Citation: BMC Genomics 2023 24:561
    Content type: Research Published on:

  20. Genomic data-based machine learning tools are promising for real-time surveillance activities performing source attribution of foodborne bacteria such as Listeria monocytogenes. Given the heterogeneity of machine...

    Authors: Pierluigi Castelli, Andrea De Ruvo, Andrea Bucciacchio, Nicola D’Alterio, Cesare Cammà, Adriano Di Pasquale and Nicolas Radomski
    Citation: BMC Genomics 2023 24:560
    Content type: Research Published on:

  21. In Alzheimer’s Disease (AD) and other dementias, hippocampal synaptic dysfunction and loss contribute to the progression of memory impairment. Recent analysis of human AD transcriptomes has provided a list of ...

    Authors: Elizabeth B. Wright, Erik G. Larsen, Cecilia M. Coloma-Roessle, Hannah R. Hart and Martha R.C. Bhattacharya
    Citation: BMC Genomics 2023 24:559
    Content type: Research Published on:

  22. Tea plants grown in high-latitude areas are often damaged by extreme freezing temperatures in winter, leading to huge economic losses. Here, the physiological and gene expression characteristics of two tea cul...

    Authors: Jinlei Luo, Shuangjie Huang, Yali Chang, Hui Li and Guiyi Guo
    Citation: BMC Genomics 2023 24:558
    Content type: Research Published on:

  23. Drug-target binding affinity (DTA) prediction is important for the rapid development of drug discovery. Compared to traditional methods, deep learning methods provide a new way for DTA prediction to achieve go...

    Authors: Leiming Xia, Lei Xu, Shourun Pan, Dongjiang Niu, Beiyi Zhang and Zhen Li
    Citation: BMC Genomics 2023 24:557
    Content type: Research Published on:

  24. Cocaine use (CU) is associated with psychiatric and medical diseases. Little is known about the mechanisms of CU-related comorbidities. Findings from preclinical and clinical studies have suggested that CU is ...

    Authors: Youshu Cheng, Amy Justice, Zuoheng Wang, Boyang Li, Dana B. Hancock, Eric O. Johnson and Ke Xu
    Citation: BMC Genomics 2023 24:556
    Content type: Research Published on:

  25. Copy number variation (CNV) is an important source of structural variation in the mammalian genome. CNV assays present a new method to explore the genomic diversity of environmental adaptations in animals and ...

    Authors: Huibin Shi, Taotao Li, Manchun Su, Huihui Wang, Qiao Li, Xia Lang and Youji Ma
    Citation: BMC Genomics 2023 24:555
    Content type: Research Published on:

  26. The Inonotus obliquus mushroom, a wondrous fungus boasting edible and medicinal qualities, has been widely used as a folk medicine and shown to have many potential pharmacological secondary metabolites. The purpo...

    Authors: Jinghua Hao, Xiaoli Wang, Yanhua Shi, Lingjun Li, Jinxin Chu, Junjie Li, Weiping Lin, Tao Yu and Dianhai Hou
    Citation: BMC Genomics 2023 24:554
    Content type: Research Published on:

  27. Black spot disease caused by the necrotrophic fungus Alternaria spp. is one of the most devastating diseases affecting Chrysanthemum morifolium. There is currently no effective way to prevent chrysanthemum black ...

    Authors: Shuhuan Zhang, Weihao Miao, Ye Liu, Jiafu Jiang, Sumei Chen, Fadi Chen and Zhiyong Guan
    Citation: BMC Genomics 2023 24:553
    Content type: Research Published on:

  28. Pleurotus giganteus is a commonly cultivated mushroom with notable high temperature resistance, making it significant for the growth of the edible fungi industry in the tropics. Despite its practical importance,,...

    Authors: Yang Yang, Yongru Pian, Jingyi Li, Lin Xu, Zhu Lu, Yueting Dai and Qinfen Li
    Citation: BMC Genomics 2023 24:552
    Content type: Research Published on:

  29. Producing animal protein while reducing the animal’s impact on the environment, e.g., through improved feed efficiency and lowered methane emissions, has gained interest in recent years. Genetic selection is o...

    Authors: Melanie K. Hess, Hannah E. Hodgkinson, Andrew S. Hess, Larissa Zetouni, Juliana C. C. Budel, Hannah Henry, Alistair Donaldson, Timothy P. Bilton, Tracey C. van Stijn, Michelle R. Kirk, Ken G. Dodds, Rudiger Brauning, Alan F. McCulloch, Sharon M. Hickey, Patricia L. Johnson, Arjan Jonker…
    Citation: BMC Genomics 2023 24:551
    Content type: Research Published on:

  30. Phosphorus is one of the essential nutrients for plant growth. Phosphate-solubilizing microorganisms (PSMs) can alleviate available P deficiency and enhance plant growth in an eco-friendly way. Although ammoni...

    Authors: Zhaomei Lu, Sheng He, Muhammad Kashif, Zufan Zhang, Shuming Mo, Guijiao Su, Linfang Du and Chengjian Jiang
    Citation: BMC Genomics 2023 24:550
    Content type: Research Published on:

  31. E2 ubiquitin conjugating enzymes and E3 ubiquitin ligases play important roles in the growth and development of plants and animals. To date, the systematic analysis of E2 and E3 genes in Rhodophyta is limited....

    Authors: Qiong Wu, Jingru Yin, Min Jiang, Jingyu Zhang and Zhenghong Sui
    Citation: BMC Genomics 2023 24:549
    Content type: Research Published on:

  32. Mycoplasmopsis (M.) bovis, the agent of mastitis, pneumonia, and arthritis in cattle, harbors a small genome of approximately 1 Mbp. Combining data from Illumina and Nanopore technologies, we sequenced and assemb...

    Authors: Sandra Triebel, Konrad Sachse, Michael Weber, Martin Heller, Celia Diezel, Martin Hölzer, Christiane Schnee and Manja Marz
    Citation: BMC Genomics 2023 24:548
    Content type: Research Published on:

  33. Genetic diversity and heterogeneous genomic signatures in marine fish populations may result from selection pressures driven by the strong effects of environmental change. Nearshore fishes are often exposed to...

    Authors: Xiang Zhao, Tianlun Zheng, Tianxiang Gao and Na Song
    Citation: BMC Genomics 2023 24:547
    Content type: Research Published on:

  34. Haemorrhagic septicaemia (HS) is a highly fatal and predominant disease in livestock, particularly cattle and buffalo in the tropical regions of the world. Pasteurella multocida (P. multocida), serotypes B:2 and ...

    Authors: Sadia Mahboob, Nimat Ullah, Muhammad Farhan Ul Haque, Waqar Rauf, Mazhar Iqbal, Amjad Ali and Moazur Rahman
    Citation: BMC Genomics 2023 24:546
    Content type: Research Published on:

  35. Teleost fish have evolved various adaptations that allow them to tolerate cold water conditions. However, the underlying mechanism of this adaptation is poorly understood in Tibetan Plateau fish. RNA-seq combi...

    Authors: Sijia Liu, Fei Tian, Delin Qi, Hongfang Qi, Yang Wang, Shixiao Xu and Kai Zhao
    Citation: BMC Genomics 2023 24:545
    Content type: Research Published on:

  36. Domains of unknown function (DUF) proteins are a number of uncharacterized and highly conserved protein families in eukaryotes. In plants, some DUFs have been predicted to play important roles in development a...

    Authors: Kai Chen, Yilin Wang, Xiaoyan Nong, Yichi Zhang, Tang Tang, Yun Chen, Qikun Shen, Changjie Yan and Bing Lü
    Citation: BMC Genomics 2023 24:544
    Content type: Research Published on:

  37. Macrocystis pyrifera (giant kelp), is a brown macroalga of great ecological importance as a primary producer and structure-forming foundational species that provides habitat for hundreds of species. It has many c...

    Authors: Jose Diesel, Gary Molano, Gabriel J. Montecinos, Kelly DeWeese, Sara Calhoun, Alan Kuo, Anna Lipzen, Asaf Salamov, Igor V. Grigoriev, Daniel C. Reed, Robert J. Miller, Sergey V. Nuzhdin and Filipe Alberto
    Citation: BMC Genomics 2023 24:543
    Content type: Research Published on:

  38. Plasmodium falciparum malaria is a leading cause of pediatric morbidity and mortality in holoendemic transmission areas. Severe malarial anemia [SMA, hemoglobin (Hb) < 5.0 g/dL in children] is the most common cli...

    Authors: Clinton O. Onyango, Qiuying Cheng, Elly O. Munde, Evans Raballah, Samuel B. Anyona, Benjamin H. McMahon, Christophe G. Lambert, Patrick O. Onyango, Kristan A. Schneider, Douglas J. Perkins and Collins Ouma
    Citation: BMC Genomics 2023 24:542
    Content type: Research Published on:

  39. The AP2/ERF transcription factor is widely distributed across the plant kingdom and plays a crucial role in various abiotic stress responses in plants. Tritipyrum, an octoploid resulting from an intergeneric cros...

    Authors: Xiaojuan Liu, Guangyi Zhou, Songshu Chen, Zhenzhen Jia, Suqin Zhang, Mingjian Ren and Fang He
    Citation: BMC Genomics 2023 24:541
    Content type: Research Published on:

  40. Intramuscular fat (IMF) content is the major indicator for evaluating chicken meat quality due to its positive correlation with tenderness, juiciness, and flavor. An increasing number of studies are focusing o...

    Authors: Shuaipeng Zhu, Binbin Zhang, Tingqi Zhu, Dongxue Wang, Cong Liu, Yixuan Liu, Yuehua He, Wenjie Liang, Wenting Li, Ruili Han, Donghua Li, Fengbin Yan, Yadong Tian, Guoxi Li, Xiangtao Kang, Zhuanjian Li…
    Citation: BMC Genomics 2023 24:540
    Content type: Research Published on:

  42. Rhodophyta are among the closest known relatives of green plants. Studying the codons of their genomes can help us understand the codon usage pattern and characteristics of the ancestor of green plants. By stu...

    Authors: Huipeng Yao, Tingting Li, Zheng Ma, Xiyuan Wang, Lixiao Xu, Yuxin Zhang, Yi Cai and Zizhong Tang
    Citation: BMC Genomics 2023 24:538
    Content type: Research Published on:

  43. The mechanism of grain development in elite maize breeding lines has not been fully elucidated. Grain length, grain width and grain weight are key components of maize grain yield. Previously, using the Chinese...

    Authors: Qing Cai, Fuchao Jiao, Qianqian Wang, Enying Zhang, Xiyun Song, Yuhe Pei, Jun Li, Meiai Zhao and Xinmei Guo
    Citation: BMC Genomics 2023 24:537
    Content type: Research Published on:

  44. Paenarthrobacter nicotinovorans ATCC 49919 uses the pyridine-pathway to degrade nicotine and could provide a renewable source of precursors from nicotine-containing waste as well as a model for studying the molec...

    Authors: Amada El-Sabeh, Andreea-Mihaela Mlesnita, Iustin-Tiberius Munteanu, Iasmina Honceriu, Fakhri Kallabi, Razvan-Stefan Boiangiu and Marius Mihasan
    Citation: BMC Genomics 2023 24:536
    Content type: Research Published on:

  46. Biological denitrification has been commonly adopted for the removal of nitrogen from sewage effluents. However, due to the low temperature during winter, microorganisms in the wastewater biological treatment ...

    Authors: Yong-Qiang Hu, Yin-Xin Zeng, Yu Du, Wei Zhao, Hui-Rong Li, Wei Han, Ting Hu and Wei Luo
    Citation: BMC Genomics 2023 24:534
    Content type: Research Published on:

  48. Surgical resection remains a critical treatment option for many patients with primary and secondary hepatic neoplasms. Extended hepatectomy (eHx) may be required for some patients with large tumors, which may ...

    Authors: Zeyuan Li, Bo Peng, Shilian Chen, Jiaping Li, Kai Hu, Lijuan Liao, Qiuli Xie, Mei Yao, Lixing Liang, Stephen Tomlinson, Guandou Yuan and Songqing He
    Citation: BMC Genomics 2023 24:532
    Content type: Research Published on:

  49. Due to the influence of extreme weather, the environment in China’s main cotton-producing areas is prone to drought stress conditions, which affect the growth and development of cotton and lead to a decrease i...

    Authors: Fenglei Sun, Yanlong Yang, Penglong Wang, Jun Ma and Xiongming Du
    Citation: BMC Genomics 2023 24:531
    Content type: Research Published on:

  50. Ligilactobacillus salivarius has been frequently isolated from the gut microbiota of humans and domesticated animals and has been studied as a candidate probiotic. Badger (Meles meles) is known as a “generalist” ...

    Authors: Yu Wang, Xiaomeng Xu, Huan Chen, Fang Yang, Bo Xu, Kun Wang, Qianwen Liu, Guixin Liang, Ruiqi Zhang, Xin’an Jiao and Yunzeng Zhang
    Citation: BMC Genomics 2023 24:530
    Content type: Research Published on:

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BMC Genomics

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