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  1. Asparagus L., widely distributed in the old world is a genus under Asparagaceae, Asparagales. The species of the genus were mainly used as vegetables, traditional medicines as well as ornamental plants. However, ...

    Authors: He Wu, Wenhua Dongchen, Yunbin Li, Sylvia E. Brown, Shugu Wei, Chun Lin, Zichao Mao and Zhengjie Liu
    Citation: BMC Genomics 2024 25:857
    Content type: Research Published on:

  2. The expansion of sequencing technologies as a result of the response to the COVID-19 pandemic enabled pathogen (meta)genomics to be deployed as a routine component of surveillance in many countries. Scaling ge...

    Authors: Pedro Milet Meirelles, Pablo Alessandro B Viana, Diogo Antonio Tschoeke, Laise de Moraes, Luciane Amorim Santos, Manoel Barral-Netto, Ricardo Khouri and Pablo Ivan P Ramos
    Citation: BMC Genomics 2024 25:856
    Content type: Research Published on:

  4. Endemic plants are key to understanding the evolutionary history and enhancing biodiversity within their unique regions, while also offering significant economic potential. The East Asian endemic genus Corchorops...

    Authors: Joonhyung Jung, Tao Deng, Yu Gyeom Kim, Changkyun Kim, Hang Sun and Joo-Hwan Kim
    Citation: BMC Genomics 2024 25:854
    Content type: Research Published on:

  5. Terniopsis yongtaiensis, a member of the Podostemaceae family, is an aquatic flowering plant displaying remarkable adaptive traits that enable survival in submerged, turbulent habitats. Despite the progressive ex...

    Authors: Miao Zhang, Xiaohui Zhang, Yinglin Huang, Zhangxue Chen and Binghua Chen
    Citation: BMC Genomics 2024 25:853
    Content type: Research Published on:

  6. Low levels of the essential amino acid lysine in maize endosperm is considered to be a major problem regarding the nutritional quality of food and feed. Increasing the lysine content of maize is important to i...

    Authors: Xiaolei Zhang, Hongtao Wen, Jing Wang, Lin Zhao, Lei Chen, Jialei Li, Haitao Guan, Zhenhai Cui and Baohai Liu
    Citation: BMC Genomics 2024 25:852
    Content type: Research Published on:

  7. The WD40 domain, one of the most abundant in eukaryotic genomes, is widely involved in plant growth and development, secondary metabolic biosynthesis, and mediating responses to biotic and abiotic stresses. WD...

    Authors: Peng Tang, Jingcai Huang, Jin Wang, Meiqi Wang, Qing Huang, Luzhao Pan and Feng Liu
    Citation: BMC Genomics 2024 25:851
    Content type: Research Published on:

  8. Adipose tissue affects not only the meat quality of domestic animals, but also human health. Adipocyte differentiation is regulated by a series of regulatory genes and cyclins. Four and half-LIM protein (FHL2)...

    Authors: An Li, Youli Wang, Yong Wang, Yan Xiong, Yanyan Li, Wei Liu, Jiangjiang Zhu and Yaqiu Lin
    Citation: BMC Genomics 2024 25:850
    Content type: Research Published on:

  9. Research into the genetic diversity of honey bee (Apis mellifera L.) populations has become increasingly significant in recent decades, primarily due to population declines attributed to human activities and clim...

    Authors: Boris Lukic, Nikola Raguz, Marin Kovačić, Ino Curik, Jana Obšteter, Janez Prešern, Jernej Bubnič, Ras Lužaić, Ivan Pihler, Goran Mirjanić, Marco Pietropaoli and Zlatko Puškadija
    Citation: BMC Genomics 2024 25:849
    Content type: Research Published on:

  10. Temperature is a crucial environmental determinant for the vitality and development of teleost fish, yet the underlying mechanisms by which they sense temperature fluctuations remain largely unexplored. Transi...

    Authors: Chuanrui Li, Xiaowei Qin, Mincong Liang, Zhiyong Luo, Zhipeng Zhan, Shaoping Weng, Changjun Guo and Jianguo He
    Citation: BMC Genomics 2024 25:848
    Content type: Research Published on:

  11. The hard clam (Mercenaria mercenaria), a marine bivalve distributed along the U.S. eastern seaboard, supports a significant shellfish industry. Overharvest in the 1970s and 1980s led to a reduction in landings. W...

    Authors: Denis Grouzdev, Sarah Farhat, Ximing Guo, Emmanuelle Pales Espinosa, Kimberly Reece, Jan McDowell, Huiping Yang, Gregg Rivara, Joshua Reitsma, Antoinette Clemetson, Arnaud Tanguy and Bassem Allam
    Citation: BMC Genomics 2024 25:847
    Content type: Research Published on:

  12. Squamosa promoter-binding protein-like (SPL) is a plant-specific transcription factor that is widely involved in the regulation of plant growth and development, including flower and grain development, stress r...

    Authors: Ailing He, Hui Zhou, Chao Ma, Qing Bai, Haizhu Yang, Xin Yao, Weijiao Wu, Guoxing Xue and Jingjun Ruan
    Citation: BMC Genomics 2024 25:846
    Content type: Research Published on:

  13. Lanping black-boned sheep (LPB) represent a distinctive mammalian species characterized by hyperpigmentation, resulting in black bone and muscle features, in contrast to their conventional counterparts exhibit...

    Authors: Yuqing Chong, Heli Xiong, Zhendong Gao, Ying Lu, Jieyun Hong, Jiao Wu, Xiaoming He, Dongmei Xi, Xiaolong Tu and Weidong Deng
    Citation: BMC Genomics 2024 25:845
    Content type: Research Published on:

  14. Oculocutaneous albinism type1 (OCA1) is caused by the TYR gene's homozygous and compound heterozygous variants. TKFC gene variants cause triokinase & FMN cyclase deficiency syndrome with variable multisystemic di...

    Authors: Engy A. Ashaat, Nora N. Esmaiel, Sonia A. El-Saiedi, Neveen A. Ashaat, Dalia Farouk Hussen, Abeer Ramadan, Mohamed Ahmed Al Kersh, Nirvana S. AbdelHakim, Ibrahim Said, Ammal M. Metwally and Alaaeldin Fayez
    Citation: BMC Genomics 2024 25:844
    Content type: Research Published on:

  15. Helicobacter pylori infects the stomach and/or small intestines in more than half of the human population. Infection with H. pylori is the most common cause of chronic gastritis, which can lead to more severe gas...

    Authors: Adalucy Alvarez-Aldana, Odion O. Ikhimiukor, Yina Marcela Guaca-González, Manuela Montoya-Giraldo, Stephanie S. R. Souza, Ana Beatriz Garcez Buiatte and Cheryl P. Andam
    Citation: BMC Genomics 2024 25:843
    Content type: Research Published on:

  16. DNA metabarcoding applies high-throughput sequencing approaches to generate numerous DNA barcodes from mixed sample pools for mass species identification and community characterisation. To date, however, most ...

    Authors: Jia Jin Marc Chang, Yin Cheong Aden Ip, Wan Lin Neo, Maxine A. D. Mowe, Zeehan Jaafar and Danwei Huang
    Citation: BMC Genomics 2024 25:842
    Content type: Research Published on:

  17. In forensic genetics, utilizing massively parallel sequencing (MPS) to analyze short tandem repeats (STRs) has demonstrated several advantages compared to conventional capillary electrophoresis (CE). Due to th...

    Authors: Hui Li, Beixu Li, Yanan Liu, Fan Yang, Yu Cao, Jianhui Xie, Xiling Liu, Zhenmin Zhao and Chengtao Li
    Citation: BMC Genomics 2024 25:841
    Content type: Research Published on:

  18. Coral reefs experience frequent and severe disturbances that can overwhelm their natural resilience. In such cases, ecological restoration is essential for coral reef recovery. Sexual reproduction has been rep...

    Authors: Yanying Zhang, Ying Zhang, Xiaoyu Tang, Xiangrui Guo, Qingsong Yang, Hao Sun, Hanzhang Wang, Juan Ling and Junde Dong
    Citation: BMC Genomics 2024 25:840
    Content type: Research Published on:

  19. The postharvest rot of kiwifruit is one of the most devastating diseases affecting kiwifruit quality worldwide. However, the genomic basis and pathogenicity mechanisms of kiwifruit rot pathogens are lacking. H...

    Authors: Lei Deng, Xufang Qiu, Qiya Su, Hui Pan, Zupeng Wang, Guoliang Qian, Pu Liu, Dejiang Liu, Xiujun Zhang, Caihong Zhong and Li Li
    Citation: BMC Genomics 2024 25:839
    Content type: Research Published on:

  20. Fishmeal and fish oil have been the main sources of protein and fatty acid for aquaculture fish. However, their increasing price and low sustainability have led the aquafeed industry to seek sustainable altern...

    Authors: Juan Manuel Peralta-Sánchez, Miguel Rabelo-Ruiz, Antonio Manuel Martín-Platero, Antonio Jesús Vizcaíno, Sara Flores-Moreno, Judit Macías-Vidal, Juan Antonio Martos-Sitcha, Francisco Javier Alarcón-López, Alberto Baños, Eva Valdivia and Manuel Martínez-Bueno
    Citation: BMC Genomics 2024 25:838
    Content type: Research Published on:

  21. Growth differentiation factor 11 (GDF11) is a member of the transforming growth factor-β (TGF-β) superfamily that has gained considerable attention over the last decade for its observed ability to reverse age-...

    Authors: Jessica Strosahl, Kaixiong Ye and Robert Pazdro
    Citation: BMC Genomics 2024 25:837
    Content type: Research Published on:

  22. The KT/HAK/KUP is the largest K+ transporter family in plants, playing crucial roles in K+ absorption, transport, and defense against environmental stress. Sweet watermelon is an economically significant horticul...

    Authors: Rui Cheng, Zhengxiang Zhao, Yan Tang, Yan Gu, Guodong Chen, Yudong Sun and Xuezheng Wang
    Citation: BMC Genomics 2024 25:836
    Content type: Research Published on:

  23. Authors: Melina Vieiros, Elisabet Navarro-Tapia, Anna Ramos-Triguero, Àgueda García-Meseguer, Leopoldo Martínez, Óscar García-Algar and Vicente Andreu-Fernández
    Citation: BMC Genomics 2024 25:835
    Content type: Correction Published on:

    The original article was published in BMC Genomics 2024 25:610

  24. Novel protein-coding genes were considered to be born by re-organization of pre-existing genes, such as gene duplication and gene fusion. However, recent progress of genome research revealed that more protein-...

    Authors: Tetsushi Yada and Takeaki Taniguchi
    Citation: BMC Genomics 2024 25(Suppl 3):834
    Content type: Research Published on:

    This article is part of a Supplement: Volume 25 Supplement 3

  25. Jackfruit (Artocarpus heterophyllus Lam.) is the world’s largest and heaviest fruit and adapts to hot, humid tropical climates. Low-temperature injury in winter is a primary abiotic stress, which affects jackfrui...

    Authors: Xiangwei Ma, Pengjin Zhu, Yingjun Du, Qiqi Song, Weiyan Ye, Xiuguan Tang, Jiang He, Yunjie Zhong, Jingli Ou and Xinhua Pang
    Citation: BMC Genomics 2024 25:833
    Content type: Research Published on:

  26. Exploring the physiological and molecular mechanisms underlying goat sexual maturation can enhance breeding practices and optimize reproductive efficiency and is therefore substantially important for practical...

    Authors: Qing Li, Tianle Chao, Yanyan Wang, Rong Xuan, Yanfei Guo, Peipei He, Lu Zhang and Jianmin Wang
    Citation: BMC Genomics 2024 25:832
    Content type: Research Published on:

  27. Pectobacterium carotovorum and Pectobacterium aroidearum represent the primary pathogens causing variable soft rot disease. However, the fundamental defense responses of Pinellia ternata to pathogens remain uncle...

    Authors: Ming Luo, Mingxing Wang, Jiawei Xu, Kaili Qu, Yuhuan Miao and Dahui Liu
    Citation: BMC Genomics 2024 25:831
    Content type: Research Published on:

  28. Alternative splicing is a pivotal mechanism of post-transcriptional modification that contributes to the transcriptome plasticity and proteome diversity in metazoan cells. Although many splicing regulations ar...

    Authors: Tzu-Chieh Lin, Cheng-Hung Tsai, Cheng-Kai Shiau, Jia-Hsin Huang and Huai-Kuang Tsai
    Citation: BMC Genomics 2024 25(Suppl 3):830
    Content type: Research Published on:

    This article is part of a Supplement: Volume 25 Supplement 3

  30. Disease can act as a driving force in shaping genetic makeup across populations, even species, if the impacts influence a particularly sensitive part of their life cycles. White-nose disease is caused by a fun...

    Authors: V. G. Twort, V. N. Laine, K. A. Field, F. Whiting-Fawcett, F. Ito, M. Reiman, T. Bartonicka, M. Fritze, V. A. Ilyukha, V. V. Belkin, E. A. Khizhkin, D. M. Reeder, D. Fukui, T. L. Jiang and T. M. Lilley
    Citation: BMC Genomics 2024 25:828
    Content type: Research Published on:

  32. Studies have identified individual blood biomarkers associated with chronic obstructive pulmonary disease (COPD) and related phenotypes. However, complex diseases such as COPD typically involve changes in mult...

    Authors: Iain R Konigsberg, Thao Vu, Weixuan Liu, Elizabeth M Litkowski, Katherine A Pratte, Luciana B Vargas, Niles Gilmore, Mohamed Abdel-Hafiz, Ani Manichaikul, Michael H Cho, Craig P Hersh, Dawn L DeMeo, Farnoush Banaei-Kashani, Russell P Bowler, Leslie A Lange and Katerina J Kechris
    Citation: BMC Genomics 2024 25:825
    Content type: Research Published on:

  33. The Testis is an important reproductive organ in male mammals and the site for spermatogenesis, androgen synthesis, and secretion. Non-coding RNAs (ncRNAs) play an important regulatory role in various biologic...

    Authors: Liyan Hu, Xingdong Wang, Shaoke Guo, Mengli Cao, Yandong Kang, Ziqiang Ding, Jie Pei, Qianyun Ge, Yi Ma and Xian Guo
    Citation: BMC Genomics 2024 25:824
    Content type: Research Published on:

  34. The Flavonoid 3’-hydroxylase gene(F3’H) is an important structural gene in the anthocyanin synthesis pathway of plants, which has been proven to be involved in the color formation of organs such as leaves, flower...

    Authors: Lupeng Chen, Youhua Yao, Yongmei Cui, Xin Li, Likun An, Yixiong Bai, Xiaohua Yao and Kunlun Wu
    Citation: BMC Genomics 2024 25:823
    Content type: Research Published on:

  36. Resveratrol has been reported to promote immunity and decrease oxidative stress, but which demonstrates biphasic effects relied on the use concentration. In this study, the effects of diet supplement with a re...

    Authors: Shiyong Yang, Chaozhan Yan, Xiaojian Pang, Wuyuntana Shao, Zihan Xu, Datian Li, Wenqiang Xu, Zhehua Zhang, Boru Su, Yunkun Li, Jiayun Wu, Xiaoli Huang, Wei Luo and Xiaogang Du
    Citation: BMC Genomics 2024 25:821
    Content type: Research Published on:

  37. Nuclear factor Y (NF-Y) plays a vital role in numerous biological processes as well as responses to biotic and abiotic stresses. However, its function in ginger (Zingiber officinale Roscoe), a significant medicin...

    Authors: Hong-Lei Li, Xiaoli Wu, Min Gong, Maoqin Xia, Wenlin Zhang, Zhiduan Chen and Hai-Tao Xing
    Citation: BMC Genomics 2024 25:820
    Content type: Research Published on:

  39. With the rise of publicly available genomic data repositories, it is now common for scientists to rely on computational models and preprocessed data, either as control or to discover new knowledge. However, di...

    Authors: Stefano Perna, Pietro Pinoli, Stefano Ceri and Limsoon Wong
    Citation: BMC Genomics 2024 25(Suppl 3):817
    Content type: Research Published on:

    This article is part of a Supplement: Volume 25 Supplement 3

  40. Cannabis sativa is seeing a global resurgence as a food, fiber and medicinal crop for industrial hemp and medicinal Cannabis industries respectively. However, a widespread moratorium on the use and research of C....

    Authors: Locedie Mansueto, Erwin Tandayu, Jos Mieog, Lennard Garcia-de Heer, Rekhamani Das, Adam Burn, Ramil Mauleon and Tobias Kretzschmar
    Citation: BMC Genomics 2024 25:818
    Content type: Research Published on:

  41. CINNAMYL ALCOHOL DEHYDROGENASE (CAD) catalyzes the NADPH-dependent reduction of cinnamaldehydes into cinnamyl alcohols and is a key enzyme found at the final step of the monolignol pathway. Cinnamyl alcohols a...

    Authors: Luigi M. Peracchi, Rhoda A.T. Brew-Appiah, Kimberly Garland-Campbell, Eric H. Roalson and Karen A. Sanguinet
    Citation: BMC Genomics 2024 25:816
    Content type: Research Published on:

  42. The DELLA proteins, a class of GA signaling repressors, belong to the GRAS family of plant-specific nuclear proteins. Members of DELLA gene family encode transcriptional regulators with diverse functions in plant...

    Authors: Houjun Zhou, Yanwen Wang, Xinyu Wang, Rui Cheng, Hongxia Zhang and Lei Yang
    Citation: BMC Genomics 2024 25:815
    Content type: Research Published on:

  43. The growth factor Neuregulin-1 (NRG1) has pleiotropic roles in proliferation and differentiation of the stem cell niche in different tissues. It has been implicated in gut, brain and muscle development and rep...

    Authors: Miguel A Berrocal-Rubio, Yair David Joseph Pawer, Marija Dinevska, Ricardo De Paoli-Iseppi, Samuel S. Widodo, Josie Gleeson, Nadia Rajab, Will De Nardo, Jeannette Hallab, Anran Li, Theo Mantamadiotis, Michael B. Clark and Christine A. Wells
    Citation: BMC Genomics 2024 25:814
    Content type: Research Published on:

  44. The invasive pest Spotted-Wing Drosophila, Drosophila suzukii (Matsumura), causes extensive damage and production losses of soft-skinned fruits. Native to Asia, the species has now spread worldwide, with first re...

    Authors: Sara Sario, João P. Marques, Liliana Farelo, Sandra Afonso, Conceição Santos and José Melo-Ferreira
    Citation: BMC Genomics 2024 25:813
    Content type: Research Published on:

  45. Staphylococci cause a wide range of infections, including implant-associated infections which are difficult to treat due to the presence of biofilms. Whilst some proteins involved in biofilm formation are know...

    Authors: Lisa Crossman, Leanne Sims, Rachael Dean, Heather Felgate, Teresa Diaz Calvo, Claire Hill, Iain McNamara, Mark A. Webber and John Wain
    Citation: BMC Genomics 2024 25:812
    Content type: Research Published on:

  46. Dermatophagoides farinae proteins (DFPs) are abundantly expressed in D. farinae; however, their functions remain unknown. Our previous transcriptome sequencing analyses revealed that the basal expression of DFP1 ...

    Authors: Wanyu Zhang, Dongling Niu, Yae Zhao, Li Hu, Chenglin Guan and Rong Chai
    Citation: BMC Genomics 2024 25:811
    Content type: Research Published on:

  47. The respiratory chain plays a key role in the growth of Mycobacterium tuberculosis complex (MTBC). However, the exact regulatory mechanisms of this system still need to be elucidated, and only a few studies have ...

    Authors: Yameng Li, Yifan Li, Yao Liu, Xianglong Kong, Ningning Tao, Yawei Hou, Tingting Wang, Qilin Han, Yuzhen Zhang, Fei Long and Huaichen Li
    Citation: BMC Genomics 2024 25:810
    Content type: Research Published on:

  49. Streptococcus suis (S. suis) is an important swine and human pathogen. A recent study reported the first isolate of S. suis capable of infecting fish, designated as S. suis strain 3112. The bacterium was isolated...

    Authors: Pakorn Aiewsakun, Wuthiwat Ruangchai, Bharkbhoom Jaemsai, Thavin Bodharamik, Watcharachai Meemetta and Saengchan Senapin
    Citation: BMC Genomics 2024 25:808
    Content type: Research Published on:

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BMC Genomics

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