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Table 3 The homologous loci of microsatellites mapped in Siberian jay on the chicken and zebra finch genome assigned using BLAST analyses of the clone sequences of the microsatellites and the homologous zebra finch WGS sequences.

From: A first-generation microsatellite-based genetic linkage map of the Siberian jay (Perisoreus infaustus): insights into avian genome evolution

Locus Linkage group Zebra finch Ensemble ID Chicken Ensemble ID Gga a Chicken genome start position (bp)
SJ010 LG1 gb|AC188472.1 NW_001471554.1 Gga1_WGA51_2b 1 9,129,918
SJ016 LG1 - NW_001471545.1 Gga1_WGA43_2b 1 9,256,107
SJ022 LG1 - NW_001471526.1 Gga1_WGA26_2b 1 2,462,620
SJ025 LG1 gb|AC188472.1 NW_001471534.1 Gga1_WGA33_2b 1 20,407,077
SJ057 LG1 - NW_001471554.1 Gga1_WGA51_2b 1 7,801,901
SJ094 LG1 - NW_001471554.1 Gga1_WGA51_2b 1 22,042,793
SJ113 LG1 - NW_001471545.1 Gga1_WGA43_2b 1 8,757,200
SJ020 unlinked - NW_001471529.1 Gga1_WGA29_2b 1 1,098,266
SJ005 unlinked gb|AC188184.3 NW_001471513.1 Gga1_WGA14_2c 1 2,080,202
SJ036 LG2 - NW_001471639.1 Gga2_WGA66_2b 2 20,469,429
SJ072 LG2 - NW_001471633.1 Gga2_WGA60_2b 2 32,273,874
CK.1B5D LG2 gb|AC225878.2 NW_001471639.1 Gga2_WGA66_2b 2 23,539,833
SJ026 LG2 gb|AC206427.2 NW_001471639.1 Gga2_WGA66_2c 2 21,465,630
SJ054 LG2 gb|AC188186.2 NW_001471633.1 Gga2_WGA60_2c 2 6,229,425
SJ116 LG2 gb|AC148379.2 NW_001471633.1 Gga2_WGA60_2c 2 22,279,892
SJ034 unlinked - NW_001471654.1 Gga2_WGA81_2b 2 2,075,856
SJ015 LG3 gb|AC188188.2 NW_001471673.1 Gga3_WGA106_2c 3 3,458,567
SJ032 LG7 - NW_001471681.1 Gga4_WGA107_2b 4 8,679,773
SJ087 LG7 gb|AC155211.2 NW_001471681.1 Gga4_WGA107_2c 4 4,015,500
SJ117 LG7 - NW_001471681.1 Gga4_WGA107_2b 4 8,679,607
SJ049 LG4 - NW_001471710.1 Gga5_WGA136_2b 5 9,314,084
SJ009 LGZ - NW_001488876.1 GgaZ_WGA457_2b Z 1,412,682
SJ101 LG2 gb|AC213969.2 NW_001488849.1 GgaZ_WGA430_2b Z 1,097,987
SJ039 LG1 gb|AC231254.2 NW_001488882.1 GgaZ_WGA463_2c Z 1,315,022
SJ076 LG3 gb|AC188376.1 NW_001488862.1 GgaZ_WGA443_2c Z 825,441
SJ050 LG1 gb|AC189030.1 - - -
SJ051 LG1 gb|AC189030.1 - - -
SJ055 LG1 gb|AC189030.1 - - -
SJ064 LG1 gb|AC206426.2 - - -
SJ112 LG1 gb|AC192320.2 - - -
CK.2A5A LG1 gb|AC188469.1 - - -
SJ029 LG4 gb|AC188184.3 - - -
SJ033 LG4 gb|AC188469.1 - - -
SJ106 LG4 gb|AC188184.3 - - -
SJ017 LG5 gb|AC192320.2 - - -
SJ041 LG9 gb|AC210531.1 - - -
SJ069 LGZ gb|AC188466.2 - - -
SJ083 LGZ gb|AC229626.2 - - -
  1. aChicken chromosome number; bVia the clone sequences of the Siberian jay microsatellites; cVia the homologous zebra finch WGS sequences