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Table 1 Selection of SAS showing differential expression when high and low Brix plants were compared or when mature and immature internodes were compared.

From: Sugarcane genes associated with sucrose content

SAS category sub category 1 sub category 2 HB vs LB MI vs II Drought ABA Suc Gluc
SCCCLR1022D05.g adapter 14-3-3 protein GF14   ↓     
SCCCRZ1001D02.g adapter 14-3-3 protein GF14   ↓↓↓↓     
SCEQRT1031D02.g adapter 14-3-3 protein GF14   ↓↓     
SCEQRT1025D06.g adapter 14-3-3 protein GF14   ↓ ↓↓    
SCVPLR1049C09.g calcium metabolism calmodulin-binding protein AAA family ATPase (cell division cycle protein 48 sub-family)   ↓     
SCCCRZ1C01H06.g calcium metabolism calmodulin-binding protein Apyrase (Nucleoside diphosphatase)   ↓↓↓↓ ↓↓    
SCJLLR1108H07.g calcium metabolism calmodulin-binding protein Ca(2+)-ATPase   ↓     
SCEZLB1012F10.g calcium metabolism calmodulin-binding protein Cyclic nucleotide-gated calmodulin-binding ion channel ↑      
SCCCAM1001A03.g calcium metabolism calmodulin-binding protein Multidrug resistant (MDR) ABC transporter ↑     ↑↑  
SCRFLR2037F09.g calcium metabolism calreticulin CRT2 Calreticulin 2 ↓ ↓↓ ↑↑   ↑↑↑ ↑↑↑
SCCCLR2C02A05.g cell wall metabolism expansin EXPA11 ↓ ↓↓     
SCQGRT1040G03.g cell wall metabolism expansin OsEXPA23 ↑   ↓↓    
SCACSB1037A07.g cell wall metabolism cytochrome P450 P-coumaroyl shikimate 3'-hydroxylase ↓↓      
SCEZHR1087F06.g cell wall metabolism cytochrome P450 Ferulate-5-hydroxylase ↓ ↑↑     
SCSGFL4193B05.g cell wall metabolism cytochrome P450 Cinnamic acid 4-hydroxylase ↓      
SCRFLR1012F12.g cell wall metabolism . Caffeic acid 3-O-methyltransferase ↑↑ ↑↑     
SCBFLR1039B05.g cell wall metabolism polysaccharide metabolism Xyloglucan endotransglycosylase   ↓↓↓↓     
SCCCLR1048D07.g cell wall metabolism lignin Phenylalanine ammonia-lyase ↑   ↓↓    
SCEQRT1024E12.g cell wall metabolism lignin Phenylalanine ammonia-lyase ↑ ↓ ↓↓ ↑↑ ↑↑↑ ↑↑↑
SCSGAM1094D05.g cell wall metabolism lignin Phenylalanine ammonia-lyase ↓ ↓     
SCCCCL6002B05.g hormone biosynthesis auxin Nitrilase ↑   ↑↑    
SCEQRT1028H06.g hormone biosynthesis auxin Nitrilase   ↓↓ ↑↑    
SCRFLR1012D12.g hormone biosynthesis auxin Nitrilase ↑ ↓ ↑↑    
SCVPLR2012A10.g hormone biosynthesis ethylene ACC oxidase ↑ ↓↓     
SCCCRT1001E01.g hormone biosynthesis jasmonic acid Lipoxygenase ↓ ↓↓↓↓ ↓↓   ↓↓↓ ↓↓↓
SCJFRT1007H07.g hormone biosynthesis jasmonic acid Lipoxygenase ↓ ↓     
SCCCLR1C03G01.g hormone biosynthesis jasmonic acid Omega-6 fatty acid desaturase ↓ ↓ ↑↑ ↑↑   
SCCCAM2004G02.g hormone-related auxin Auxin transport/auxin eflux carrier (OsPIN1c) ↓      
SCCCLR2002F08.g hormone-related auxin dormancy/auxin associated family (auxin-repressed) ↓ ↑↑     
SCBGLR1023D05.g pathogenicity R-gene transduction Zinc finger protein (LSD1) ↑ ↓↓↓ ↓↓   ↑↑↑  
SCAGLR1043F02.g protein metabolism calmodulin-binding protein HSP70 (heat shock) ↑↑ ↓ ↑↑    
SCCCCL3120G07.g protein metabolism calmodulin-binding protein HSP70 (heat shock) ↑   ↑↑    
SCCCRZ1003A03.g protein metabolism calmodulin-binding protein HSP70 (heat shock)   ↑     
SCEQRT2099H01.g protein kinase calcium-dependent ScCDPK-27   ↓     
SCVPAM1055A12.g protein kinase casein kinase ScCKI-11 ↑ ↓ ↑↑    
SCCCLR1C04G08.g protein kinase casein kinase ScCKI-3 ↑      
SCCCLR1022H07.g protein kinase cell cycle-related ScCDK-11   ↓     
SCBGLR1096C08.g protein kinase cell cycle-related ScCDK-18   ↓     
SCVPRT2081G05.g protein kinase cell cycle-related ScCDK-3   ↓     
SCRLFL1012B10.g protein kinase cell cycle-related ScCDK-6   ↓     
SCSBAM1084E01.g protein kinase MAPK/MAPKK/MAPKKK ScMAPK-4 ↑ ↑↑   ↓↓   
SCEPAM1020A03.g protein kinase other ScATN1-2 ↓      
SCVPCL6042B07.g protein kinase other ScCyclin G-associated kinase-like protein-1   ↓     
SCJFRZ2032C08.g protein kinase SNF-like kinase ScCIPK-14   ↑ ↑↑    
SCBFSB1046D04.g protein kinase SNF-like kinase ScCIPK-16 ↑     ↓↓↓  
SCMCRT2103B04.g protein kinase SNF-like kinase ScCIPK-21 ↑↑ ↑ ↓↓   ↓↓  
SCCCLR1C05B07.g protein kinase SNF-like kinase ScCIPK-3 ↑   ↑↑   ↓↓↓ ↓↓↓
SCJLRZ1023H04.g protein kinase SNF-like kinase ScCIPK-9   ↓↓ ↓↓    
SCEPRZ1009C10.g protein kinase SNF-like kinase ScOSA PK-1   ↓↓    ↓↓ ↓↓
SCCCST1004A07.g protein kinase SNF-like kinase ScOSA PK-7   ↓     
SCACLR2007G02.g protein kinase SNF-like kinase ScPKABA1-1 ↑↑     ↓↓ ↓↓↓
SCRFLR1034G06.g protein kinase SNF-like kinase ScPKABA1-3 ↑    ↓↓ ↓↓↓ ↓↓↓
SCJFRZ2032G01.g protein kinase SNF-like kinase ScSnRK1-2   ↓↓ ↓↓   ↑  
SCCCCL5002B10.g protein kinase undefined ScPK-BI2   ↓↓↓     
SCJLLR1054C03.g protein kinase undefined ScPK-BIII7 ↑      
SCMCSD2061D05.g protein kinase undefined unclassified ScUPK-46 (CIPK) ↓      
SCCCLB1001D03.g protein phosphatase serine/threonine PPM family PP2A/Catalytic Subunit   ↓     
SCEZLR1052F07.g protein phosphatase serine/threonine PPM family PP2A/Subunit A   ↓     
SCEPRZ1010E06.g protein phosphatase serine/threonine PPM family PP2C-like ↓↓ ↓ ↑↑ ↑↑ ↓↓↓ ↓↓↓
SCEZHR1088E02.g protein phosphatase tyrosine phosphatase Dual Specificity Protein Phosphatases (DSPP) ↑↑↑ ↓ ↑↑   ↓↓↓ ↓↓↓
SCMCST1051F08.g protein phosphatase tyrosine phosphatase Tyrosine Specific Protein Phosphatases (PTP)    ↓↓    
SCSBHR1056H08.g receptor ethylene EIN2   ↑     
SCUTLR2023D06.g transcription factor CCAAT ScCA2P5 ↑      
SCCCLR1066G08.g transcription factor HGM (high mobility group protein)   ↑   ↓↓    
SCBFAD1046D01.g transcription factor HLH (helix-loop-helix) ScbHLH1   ↓↓     
SCCCRZ1001H05.g transcription factor HLH (helix-loop-helix) ScbHLH7 ↑↑   ↓↓   ↓↓↓ ↓↓↓
SCAGLR1021G10.g transcription factor homeobox ScHB2   ↓↓    ↓↓↓ ↓↓↓
SCRLAM1010D08.g transcription factor homeobox ScHB41   ↓↓     
SCEZLB1010E10.g transcription factor hormone-related/auxin ScABI40 ↓      
SCCCLR1024F10.g transcription factor hormone-related/auxin ScARF46   ↓     
SCCCRZ1001G10.g transcription factor hormone-related/Aux/IAA ScAUXI134   ↓↓↓↓ ↓↓   ↓↓↓ ↓↓↓
SCVPLR2005H03.g transcription factor hormone-related/Aux/IAA    ↓↓     
SCJFRZ2009F04.g factor transcription hormone-related/Aux/IAA    ↓     
SCJLLR1054C09.g transcription factor hormone-related/Aux/IAA    ↓↓     
SCUTST3086B02.g transcription factor hormone-related/ethylene/AP2/ERE BP ScEREB59   ↓     
SCCCLR1001D10.g transcription factor hormone-related/ethylene/AP2/ERE BP DRE binding factor 2   ↑ ↑↑    
SCBGFL4052C11.g transcription factor hormone-related/ethylene ScEIL1   ↓     
SCCCRZ1004H12.g transcription factor hormone-related/ethylene ScEIL2 ↓ ↓     
SCCCRZ2C03D11.g transcription factor hormone-related/gibberellin ScGRAS71   ↓↓     
SCEPRZ1008F02.g transcription factor LIM (protein-protein interaction)   ↓ ↓↓     
SCQGLR1085G10.g transcription factor MADS ScMADS17   ↑ ↓↓    
SCSFAD1124E07.g transcription factor MYB ScMYB70   ↑     
SCRURT2010A10.g transcription factor MYB ScMYB120   ↓     
SCCCLR2003E10.g transcription factor NAM (no apical meristem) ScNAC27 ↓↓     ↓↓↓ ↓↓↓
SCRUAD1132D09.g transcription factor NAM (no apical meristem) ScNAC51       
SCACLR1130H08.g transcription factor zinc finger protein ScYAB16   ↓     
SCEZST3147A10.g transcription factor zinc finger protein ScC3H84 ↓ ↓     
SCCCCL4003D08.g transcription factor zinc finger protein ScC3H95   ↓     
SCQGRZ3011D06.g transcription factor zinc finger protein/alfin-like ScALF9   ↓     
SCCCRZ1002E08.g stress drought and cold response Aquaporin (plasma membrane) ↓ ↓↓     
SCCCST3001H12.g stress drought and cold response Aquaporin (plasma membrane) ↑ ↓↓     
SCEQRT2100B02.g stress drought and cold response Aquaporin (plasma membrane) ↑ ↓↓     
SCCCLR1024C03.g stress drought and cold response Aquaporin (tonoplast intrinsic protein) ↓ ↓     
SCCCRZ1001F02.g stress drought and cold response Aquaporin (tonoplast intrinsic protein) ↓ ↓     
SCQGLR1085F11.g stress drought-induced Dehydrin ↓ ↓↓↓ ↑↑   ↓↓↓ ↓↓↓
SCCCLR2C01F06.g stress wound-induced wound-responsive family protein ↑↑↑ ↑    ↑↑↑ ↑↑↑
  1. The table also shows differential expression of the same SAS as seen in [31] for plants submitted to drought and ABA treatment. Differential expression refers to cDNA microarray analysis except for the last two columns, which refer to qRT-PCR data obtained in samples of plantlets treated with sucrose or glucose. The table lists a selection of SAS whose expression was enriched or decreased in two technical replicates for each biological sample. For a complete list see additional file 2. The up arrow indicates that the SAS is more expressed, the down arrow indicates that the SAS is less expressed. The number of arrows indicates the number of hybridizations.
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BMC Genomics

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