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Table 3 Gene Ontology enrichment by biological process for differentially-expressed genes in BPS

From: Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae

BIOLOGICAL PROCESSES WITH UP-REGULATED GENES
Category p-value1 #genes2 Category p-value1 #genes2
Ion transport 1.00 E-14 20 Oxidation reduction 1.38 E-03 11
Iron ion transport 4.47 E-13 11 Metal ion transport 1.55 E-03 3
Copper ion import 2.37 E-06 4 Zinc ion transport 2.16 E-03 3
Siderophore transport 2.62 E-06 3 Siderophore-iron transport 2.78 E-03 2
Cellular iron ion homeostasis 9.36 E-05 6 Biopolymer biosynthetic process 2.87 E-03 7
Copper ion transport 1.17 E-04 4 Response to starvation 2.90 E-03 3
Intracellular copper ion transport 2.07 E-04 3 High-affinity iron ion transport 3.85 E-03 2
Transport 2.4 E-04 28 Cation transport 5.40 E-03 3
Response to inorganic substance 1.13 E-03 2    
BIOLOGICAL PROCESSES WITH DOWN-REGULATED GENES
Category p-value 1 # genes 2 Category p-value 1 #genes 2
Tricarboxylic acid cycle 5.25 E-03 3 Regulation of ergosterol 6.36 E-03 1
    biosynthetic process   
  1. 1Calculated from hypergeometric distribution P < 0.01
  2. 2Number of identified genes in the Gene Ontology (GO) category
  3. Enriched categories were identified using Funspec; see Additional file 9 for complete tables.