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Table 1 Comparison of the available features of ESTPiper with other web-based EST analysis tools.

From: ESTPiper – a web-based analysis pipeline for expressed sequence tags

Web-based EST analysis pipeline preAssemble EGassembler ESTExplorer ESTpass WebTraceMiner ESTPiper
Base calling Yes No No No Yes Yes
Data cleaning Yes Yes Yes Yes Yes Yes
De novo assembly No Yes Yes Yes No Yes
Genome alignment No No No No No Yes
Annotation No No Yes Yes No Yes
GO analysis No No Yes Yes No Yes
Probe design No No No No No Yes