Table 1 Comparison of the available features of ESTPiper with other web-based EST analysis tools.
From: ESTPiper – a web-based analysis pipeline for expressed sequence tags
Web-based EST analysis pipeline | preAssemble | EGassembler | ESTExplorer | ESTpass | WebTraceMiner | ESTPiper |
|---|---|---|---|---|---|---|
Base calling | Yes | No | No | No | Yes | Yes |
Data cleaning | Yes | Yes | Yes | Yes | Yes | Yes |
De novo assembly | No | Yes | Yes | Yes | No | Yes |
Genome alignment | No | No | No | No | No | Yes |
Annotation | No | No | Yes | Yes | No | Yes |
GO analysis | No | No | Yes | Yes | No | Yes |
Probe design | No | No | No | No | No | Yes |