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Table 1 Identity and structure of genes within BACs

From: Genic regions of a large salamander genome contain long introns and novel genes

BAC Ambystoma Sequence Presumptive Human Ortholog Complete Axolotl
ORF?
Introns
Identified
Exons
Identified
H3_1D2 Tig_NM_4343_Contig_1 NP_004334.1 calreticulin precursor Complete 8 9
H3_4A11 Mex_Nohits_2574_Contig_1 Unknown Complete 9c 10
H3_4F24 Tig_NM_362_Contig_1 NP_003247.1 tissue inhibitor of metalloproteinase 4 precursor Unknown 1c 3e
H3_37I11 Tig_NM_7006_Contig_1 NP_008937.1 cleavage and polyadenylation specific factor 5 Partial 5 6
H3_37I23 Tig_NM_18948_Contig_1 NP_061821.1 mitogen-inducible gene 6 protein Completea - 1
H3_37N9 Mex_Nohits_697_Contig_1 NP_071436.1 platelet receptor Gi24 Partial 5 5
H3_41L21 Mex_NM_687_Contig_1 NP_000678.1 S-adenosylhomocysteine hydrolase Pseudogeneb - -
H3_46H10 Tig_NM_1428_Contig_1 NP_001419.1 enolase 1 Partial - 1
H3_48F8 Tig_NM_859_Contig_1 NP_000850.1 3-hydroxy-3-methylglutaryl-Coenzyme A reductase Complete 14 15
H3_48K23 Mex_NM_20169_Contig_4 NP_996846.1 retinoic acid receptor responder Partial 1c 2
H3_61C19 Mex_Nohits_221_Contig_2 Unknown Complete - 1
H3_61K9 Mex_NM_5032_Contig_2 NP_005023.2 plastin 3 Partial 1 2
H3_62O21 Mex_NM_18947_Contig_1f NP_002550.2 purinergic receptor P2X3 Partial 7 8
H3_67L15 Tig_NM_4343_Contig_1 NP_004334.1 calreticulin precursor Complete 8e 9
H3_71A8 Tig_NM_182513_Contig_1 NP_872319.1 spindle pole body component 24 homolog False positive - -
H3_71D15 Mex_NM_6276_Contig_2 NP_001026854.1 splicing factor, arginine/serine-rich 7, 35 kDa Completea - 1
  1. a – start codon was not identified, but it is likely present in assembled sequence. b – this BAC contains a presumptive processed pseudogene. The aligning BAC and cDNA sequence are 91% identical and the BAC sequence contains no introns. c – not used in multispecies alignments due to lack of obvious vertebrate orthologies. d – exons were identified on two different contigs. e – not considered in multispecies alignments due to redundancy with H3_1D2. f – contig was originally identified as cytochrome c.