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Table 1 Gene ontology functional terms and their respective significances under the standard (unweighted) and the weighted tests obtained for the HPV experiment [19] with the permutation test.

From: Gene set internal coherence in the context of functional profiling

    Weighted Unweighted
GO name BP size Log Odds p-value Adjusted
p-value
Log Odds p-value Adjusted
p-value
negative regulation of protein kinase activity GO:0006469 100 3.030 <0.001 <0.001 2.548 0.006 0.083
DNA replication initiation GO:0006270 44 4.281 <0.001 <0.001 4.162 <0.001 <0.001
SRP-dependent cotranslational protein targeting to membrane GO:0006614 12 4.103 <0.001 <0.001 4.032 <0.001 <0.001
DNA strand elongation GO:0006271 13 4.079 <0.001 <0.001 3.945 <0.001 <0.001
regulation of smooth muscle contraction GO:0006940 18 2.875 0.010 0.088 3.597 <0.001 <0.001