Skip to main content

Advertisement

Table 4 Identified (miRNA) hairpins in genomes of C. elegans and four viruses

From: In silico miRNA prediction in metazoan genomes: balancing between sensitivity and specificity

Organism Identified miRNA hairpins a Identified genomic hairpins miRNA hairpins % (number) b genomic hairpin loci % (number) b
    L = 1.0 L ≥ 0.05 L ≥ 1e-5 L = 1.0 L ≥ 0.05 L ≥ 1e-5
C. elegans 128/132 3,526,115 34 (45) 71 (94) 89 (117) 0.1 (3,110) 0.6 (21,313) 2.8 (98,309)
EBV 23/23 6,182 35 (8) 87 (20) 100 (23) 0.3 (20) 2.6 (162) 13 (793)
MDV 8/8 5,374 25 (2) 100 (8) 100 (8) 0.3 (15) 1.3 (69) 6.1 (329)
HCMV 10/11 c 9,747 40 (4) 90 (9) 100 (10) 0.3 (30) 2.5 (247) 12 (1,147)
KSHV 12/13 d 4,296 17 (2) 83 (10) 92 (11) 0.5 (20) 2.2 (94) 10 (433)
  1. a Identified miRNA hairpins/number of known miRNA hairpins in genome(s) in miRBase version 9.0 [44].
  2. b Percentage of miRNA or genomic hairpin loci that have at least a certain L-score for scoring model Metazoa (absolute numbers between brackets).
  3. c MiRNA hcmv-mir-UL148D could not be mapped on the genomic sequence of HCMV [EMBL: X17043].
  4. d MiRNA kshv-mir-K12-10b could not be mapped on the genomic sequence of KSHV [EMBL: U75698HCMV].