Figure 4From: Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGEDistribution of transcript levels between the germline and the soma. (A) Histogram showing the distribution of the Germline/Soma tag count ratio for those common genes between the germline library and the soma library. The data correspond to 981 genes with germline tag counts ≥ 9 and soma tag counts ≥ 1. ~75% of these appear to have the Germline/Soma tag count ratio ≥ 2. (B) Scatter plot showing the distribution of tag counts for those common genes between the germline library and the soma library. The data represent 1552 genes with tag counts ≥ 2 in both the germline library and the soma library. Data points for genes that are expressed at the same level in the germ line and soma should fall along the mid-diagonal with a G/S tag ratio of 1, while genes that have enriched germline expression should be to the right of the diagonal with a G/S ≥ 2. The dashed blue line provides a measurement of sampling confidence based on the statistical analysis of [47]. Given a particular number of tags generated for a gene in the soma library, there is a 99% chance that the number of tags generated in the germline library for the same gene will lie to the left of the dashed blue line. In the set of germline-enriched genes that were selected, there are 41 genes below this 99% confident line; however, 19 out of the 23 genes that have a discrete in situ expression pattern in the NEXTDB appear to be germline-enriched.Back to article page