Table 3 Sequences of predicted STIV pre-miRNAs and miRNAs and their genomic locations
Precursor no. | Predicted pre-miRNA sequence, 5' to 3' (mature miRNA sequence highlightened in italic) | STIV sequence coordinates |
|---|---|---|
1 | GGUGUAACAUCUCAAGAUACGAUGGAUCUAUG AGAGAGACUAAAAAUGUGGACAACCUUUCAGACUAUUAUCUUGAGAGAAUAUAUCUU | 14907–14995 |
2 | AAAAGUUUCCGAGAUGGUAAAGACUCUGAGAUAAUAUCGAGAGAAUAAAGACUCUUUCAGAGAUAAUAUCUUACG AUGUUGUACCACCUCAUU | 18571–18663 |
3 | AACAACGUCUUGAGAUACUAUUAUCUUA AGAUACUAUUAUCUUAAGAUACUAUUAUCUUAAG AUACUUUC | 60321–60390 |
4 | ACAAACUGGUGAUAUAUUCUUUCAGAAGAUAUU CUCUGGGAGAGUAUCUUUCAGAAGAUUAUAUC UCAGAAAGUUUUAGG | 65173–65252 |
5 | GUCUAGAAAUAUUAUUGAGGGUAUCUUACAAUAUUAGUAAAGAUAUCUUCUGAAAGAGUAUCUUACUAUAGUAGUACAGUAUCU UACAAUAGAGAGAUCU | 87293–87392 |
6 | UUAGGUCUGGAUAUUAUCUCUGAAAGAACGUCUUAGG AUAAAAUCUUAGGAUAUUCUUUCAGAAGA UUUCUAGGAUAAGA | 42283–42362 |
7 | UGACGGAGGGUUGUUCCACUCCACGGGGGCUUUGGGACACUCUACCUGAACCCUGGGUGGAGACCACUCUUUGU A | 195–121 |
8 | CGGUGCGAUCGGUGUACACACAAGUGAUG GACACACCACACAGGUCCAGCACGUGUGUACACCAG AGGUAAUUUUCUUAA | 4966-4887 |
9 | UAGAGAUGGUAAUAUCUUAAGAUAAUAGUAUC GAGAUGGUAAUAUCUUAAGAUAAUAGUAUCGAGAUGGUAAUAUCUUAAG AUAUUUAGU | 28954-28865 |
10 | GCGAGAUACUUUGUGAGAGAUAUCUUACGAUA GUAAUAGUCUUGCGAGAGAAUAUCUUCUGAAAGAGAUUAUAUCUGAAAGAGAUUACGUCUUAAGAUAUCUUACA CAUCACUCUUGUCCU | 84184-834064 |
11 | GGUUUCGGCGGCAAUAAGGCGAGUCUCAACAUUAAACCCCAUAC AAAGUCUACGGUCUCUGUAUGAGGAAUGUUGGGAC ACUUGCGCUUGUAACAACGCUUGCAGUCU | 100334-100217 |
12 | GGGACCCUUUAAAUCAGAAAGGAUAACACCAGUGUAAACAUAAGUCAUAUGCC UGUGUUGGUUCUCACAGGUGUGUUACUUAUGUUUACACU GGUCUUAGCCUUGCUGGA | 104919-104810 |