Table 2 Codon usage in protein-coding genes of T. rubrum, T. mentagrophytes, T. ajelloi, M. canis and M. nanum
Codon | AA | M. canis | M. nanum | T. ajelloi | T. mentagrophytes | T. rubrum |
|---|---|---|---|---|---|---|
AAA | Lys (K) | 173 | 158 | 168 | 170 | 209 |
AAG | Lys (K) | 2 | 9 | 9 | 3 | 8 |
| Â | Total K | 175 | 167 | 177 | 173 | 217 |
AAC | Asn (N) | 12 | 20 | 15 | 10 | 17 |
AAU | Asn (N) | 256 | 259 | 246 | 262 | 307 |
| Â | Total N | 268 | 279 | 261 | 272 | 324 |
ACA | Thr (T) | 139 | 129 | 126 | 136 | 146 |
ACC | Thr (T) | 0 | 0 | 1 | 0 | 0 |
ACG | Thr (T) | 0 | 0 | 0 | 0 | 0 |
ACU | Thr (T) | 92 | 100 | 102 | 97 | 101 |
| Â | Total T | 231 | 229 | 229 | 233 | 247 |
AGC | Ser (S) | 7 | 6 | 2 | 5 | 6 |
AGU | Ser (S) | 144 | 149 | 154 | 152 | 165 |
| Â | Total S | 151 | 155 | 156 | 157 | 171 |
AUA | Ile (I) | 357 | 353 | 336 | 379 | 394 |
AUC | Ile (I) | 12 | 18 | 11 | 8 | 19 |
AUU | Ile (I) | 207 | 209 | 247 | 203 | 231 |
| Â | Total I | 576 | 580 | 594 | 590 | 644 |
AUG | Met (M) | 114 | 117 | 108 | 116 | 124 |
| Â | Total M | 114 | 117 | 108 | 116 | 124 |
CAA | Gln (Q) | 95 | 94 | 91 | 100 | 105 |
CAG | Gln (Q) | 4 | 4 | 4 | 1 | 3 |
| Â | Total Q | 99 | 98 | 95 | 101 | 108 |
CAC | His (H) | 12 | 9 | 5 | 8 | 8 |
CAU | His (H) | 70 | 70 | 77 | 70 | 78 |
| Â | Total H | 82 | 79 | 82 | 78 | 86 |
CCA | Pro (P) | 46 | 53 | 38 | 55 | 60 |
CCC | Pro (P) | 2 | 0 | 1 | 0 | 1 |
CCG | Pro (P) | 2 | 3 | 0 | 0 | 0 |
CCU | Pro (P) | 98 | 91 | 106 | 91 | 94 |
| Â | Total P | 148 | 147 | 145 | 146 | 155 |
CGA | Arg (R) | 0 | 1 | 3 | 0 | 1 |
CGC | Arg (R) | 0 | 0 | 0 | 0 | 0 |
CGG | Arg (R) | 0 | 0 | 0 | 0 | 0 |
AGA | Arg (R) | 82 | 83 | 86 | 82 | 91 |
AGG | Arg (R) | 0 | 0 | 0 | 0 | 1 |
CGU | Arg (R) | 12 | 9 | 9 | 9 | 10 |
| Â | Total R | 94 | 93 | 98 | 91 | 103 |
CUA | Leu (L) | 19 | 13 | 16 | 13 | 14 |
CUC | Leu (L) | 1 | 0 | 0 | 0 | 0 |
CUG | Leu (L) | 1 | 0 | 1 | 1 | 1 |
UUA | Leu (L) | 655 | 666 | 658 | 673 | 705 |
UUG | Leu (L) | 10 | 13 | 12 | 7 | 9 |
CUU | Leu (L) | 43 | 41 | 53 | 34 | 42 |
| Â | Total L | 729 | 733 | 740 | 728 | 771 |
GAA | Glu (E) | 97 | 104 | 105 | 104 | 125 |
GAG | Glu (E) | 7 | 7 | 4 | 6 | 8 |
| Â | Total E | 104 | 111 | 109 | 110 | 133 |
GAC | Asp (D) | 5 | 2 | 5 | 4 | 5 |
GAU | Asp (D) | 112 | 111 | 108 | 113 | 141 |
| Â | Total D | 117 | 113 | 113 | 117 | 146 |
GCA | Ala (A) | 62 | 63 | 63 | 64 | 64 |
GCC | Ala (A) | 6 | 2 | 2 | 2 | 3 |
GCG | Ala (A) | 2 | 5 | 0 | 2 | 1 |
GCU | Ala (A) | 152 | 155 | 156 | 153 | 161 |
| Â | Total A | 222 | 225 | 221 | 221 | 229 |
GGA | Gly (G) | 44 | 39 | 36 | 45 | 54 |
GGC | Gly (G) | 0 | 0 | 1 | 1 | 1 |
GGG | Gly (G) | 1 | 2 | 1 | 1 | 2 |
GGU | Gly (G) | 251 | 252 | 253 | 250 | 256 |
| Â | Total G | 296 | 293 | 291 | 297 | 313 |
GUA | Val (V) | 125 | 124 | 113 | 125 | 140 |
GUC | Val (V) | 1 | 1 | 2 | 1 | 1 |
GUG | Val (V) | 8 | 12 | 6 | 3 | 2 |
GUU | Val (V) | 130 | 122 | 133 | 122 | 124 |
| Â | Total V | 264 | 259 | 254 | 251 | 267 |
UAA | Ter (.) | 13 | 13 | 12 | 13 | 14 |
UAG | Ter (.) | 1 | 1 | 2 | 1 | 2 |
| Â | Total. | 14 | 14 | 14 | 14 | 16 |
UAC | Tyr (Y) | 13 | 25 | 14 | 18 | 22 |
UAU | Tyr (Y) | 227 | 217 | 229 | 224 | 248 |
| Â | Total Y | 240 | 242 | 243 | 242 | 270 |
UCA | Ser (S) | 148 | 142 | 133 | 148 | 149 |
UCC | Ser (S) | 2 | 2 | 2 | 1 | 2 |
UCG | Ser (S) | 0 | 1 | 1 | 1 | 3 |
UCU | Ser (S) | 127 | 136 | 140 | 133 | 138 |
| Â | Total S | 277 | 281 | 276 | 283 | 292 |
UGA | Trp (W) | 61 | 62 | 60 | 61 | 63 |
UGG | Trp (W) | 1 | 0 | 2 | 1 | 1 |
| Â | Total W | 62 | 62 | 62 | 62 | 64 |
UGC | Cys (C) | 1 | 0 | 0 | 0 | 0 |
UGU | Cys (C) | 31 | 32 | 35 | 30 | 37 |
| Â | Total C | 32 | 32 | 35 | 30 | 37 |
UUU | Phe (F) | 339 | 323 | 358 | 346 | 377 |
UUC | Phe (F) | 65 | 71 | 42 | 54 | 65 |
| Â | Total F | 404 | 394 | 400 | 400 | 442 |