Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont

Table 1 Predicted genome-of-origin for contigs and singletons of the holobiont

Type of UniSeq	# of UniSeqs	Predicted genome of origin	Prediction assignment	Confidence	# of ESTs (%)
Contig	775	Aiptasia	BBH = Cnidaria	high	4029 (39)
Contig	32	Symbiodinium	BBH = Alveolata	high	88 (0.86)
Contig	144	Aiptasia	E-value(Cnidaria) < E-value(Alveolata)	medium	540 (5.3)
Contig	63	Symbiodinium	E-value(Alveolata) < E-value(Cnidaria)	medium	228 (2.2)
Contig	14	Aiptasia	sim%(Cnidaria) > sim%(Alveolata)	low	576 (5.6)
Contig	7	Symbiodinium	sim%(Alveolata) > sim%(Cnidaria)	low	27 (0.26)
Contig	2	n/a	no assignment	-	5 (0.049)
Contig	390	n/a	no hit	-	1294 (12)
Sum	1427				6787 (66%)
Singleton	1731	Aiptasia	BBH = Cnidaria	high	1731 (16)
Singleton	91	Symbiodinium	BBH = Alveolata	high	91 (0.88)
Singleton	307	Aiptasia	E-value(Cnidaria) < E-value(Alveolata)	medium	307 (2.9)
Singleton	175	Symbiodinium	E-value(Alveolata) < E-value(Cnidaria)	medium	175 (1.7)
Singleton	42	Aiptasia	sim%(Cnidaria) > sim%(Alveolata)	low	42 (0.41)
Singleton	49	Symbiodinium	sim%(Alveolata) > sim%(Cnidaria)	low	49 (0.48)
Singleton	1103	n/a	no hit	-	1103 (10)
Sum	3498				3498 (34%)

Details can be found in Additional file 2: Flow diagram illustrating BBH appraoch and Additional File 3: Detailed EST (N = 10,285) distribution and assignment.

ISSN: 1471-2164