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Table 2 Summary of search functions and criteria available in the CellMiner resource.

From: CellMiner: a relational database and query tool for the NCI-60 cancer cell lines

  Meta data Download Query Intersection Drug data Mutation data
   Raw Normalized     
Cell lines NCI-60/DU145-RC0.1/both NCI-60/DU145/RC0.1 NCI-60/DU145/RC0.1 NCI-60/DU145/RC0.1/both NCI-60/DU145/RC0.1 NCI-60 NCI-60 (59 cell lines)
Dataset selection (molecular type) NA DNA/RNA/Protein DNA/RNA/Protein DNA/RNA Protein DNA/RNA/Protein Drug sensitivity DNA
User select cell line criteria All/tissue type selection All All/tissue type selection All All All/tissue type selection NA
User select identifier type NA Raw Normalized gene or platform specific id, chromosome or genomic location NA NSC, Chemical name, Molecular formula NA
User select identifier list NA NA NA File attachment, list, single value NA File attachment, list, single value NA
Output data fields Information on Patient, cell line, Experimental details Quantification of image files Log base2 HUGO, Entrez Gene id, Gene Symbol, Chromosome, Cytoband, mRNA-Refseq, Protein-Refseq, Transcription start and Transcription-end HUGO, Entrez Gene id, Gene Symbol, Chromosome, Cytoband, mRNA-Refseq, Protein-Refseq, Transcription start and Transcription-end Chemical name, SMILES, molecular formula, molecular weight, mechanism of action HUGO, Zygosity, CDS mutation, AA mutation, mutation characterization
Output Format HTML table of cell line information zip Text of log2 intensity values HTML, MS-Excel, text file of log2 intensity values Text file of log2 intensity values for each the matching datasets HTML, MS-Excel, Text HTML, Text