Figure 3
From: PairWise Neighbours database: overlaps and spacers among prokaryote genomes
Study of a 130 bps incorrectly annotated overlap. The BLAST results show that the gene NC_002947.PP_2781 of P. putida KT2440 is longer than its orthologous gene NC_009512.Pput_2974 in P. putida F1 (A). This difference in length indicates that the 130 bps overlap between NC_002947.PP_2780 and NC_002947.PP_2781 is not conserved and thus not reliable. In the NC_002947.PP_2781Downstream Gene label is shown that this gene has no SD sequence (B), while in the NC_009512.Pput_2974 upstream gene label is shown that this gene has the SD sequence at 7 nucleotides to the start codon (C).