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Table 1 Genes with or without SD in E. coli K12

From: PairWise Neighbours database: overlaps and spacers among prokaryote genomes

 

Number of genes

Percentage of genes with SD

Percentage of genes without SD

All E. coli genes

4,133

69.66

30.34

Highly expressed genes (HEG) from E. coli (1)

253

81.03

18.97

Horizontally transferred genes (HGT) from E. coli (2)

310

68.39

31.61

Mean and standard deviation of 100 sets of 300 genes randomly selected from E. coli

300

69.04 ± 2.58

30.96 ± 2.58

  1. Number of genes and percentage of genes with the Shine-Dalgarno motif from E. coli K12.
  2. (1) HEG extracted from the HEG-DB http://genomes.urv.es/HEG-DB[39]
  3. (2) HGT extracted from the HGT-DB http://genomes.urv.es/HGT-DB[40]
  4. Abbreviations: SD, Shine-Dalgarno
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BMC Genomics

ISSN: 1471-2164

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