Table 5 Analysis of the BESs of H. erato (HEB and HER), H. virescens (HVB and HVR), and M. sexta (MSB and MSR) using the RepeatMasker program [47].
BAC library | Total BAC ends sequenced | No. BAC ends with sequences | Successful rate of BAC end sequencing (%) | Average length Q20 sequences (bp) | Total length Q20 sequences (bp) |
|---|---|---|---|---|---|
HEB/HER | 384 | 246 | 64.06 | 478 | 117702 |
HVB/HVR | 384 | 299 | 77.86 | 665 | 198779 |
MSB/MSR | 384 | 273 | 71.09 | 659 | 180031 |
| Â | Â | All repeats | Retroelements | ||
BAC library | GC content (%) | Length (bp)/no. | Rate in genome (%) | Length (bp)/no. | Rate in genome (%) |
HEB/HER | 32.35 | 11781/231 | 10.01 | 777/2 | 0.66 |
HVB/HVR | 36.18 | 6287/103 | 3.16 | 1178/3 | 0.59 |
MSB/MSR | 35.19 | 6018/125 | 3.34 | 1490/10 | 0.83 |
| Â | DNA transposons | Rolling circles | Small RNA | ||
BAC library | Length (bp)/no. | Rate in genome (%) | Length (bp)/no. | Rate in genome (%) | Length (bp)/no. |
HEB/HER | 279/2 | 0.24 | 701/1 | 0.6 | 0 |
HVB/HVR | 0 | 0 | 0 | 0 | 1331/2 |
MSB/MSR | 535/1 | 0.3 | 0 | 0 | 166/1 |
| Â | Small RNA | Simple repeats | Low complex repeats | ||
BAC library | Rate in genome (%) | Length (bp)/no. | Rate in genome (%) | Length (bp)/no. | Rate in genome (%) |
HEB/HER | 0 | 777/17 | 0.66 | 9247/206 | 7.86 |
HVB/HVR | 0.67 | 779/21 | 0.39 | 2999/79 | 1.51 |
MSB/MSR | 0.09 | 487/11 | 0.27 | 3340/103 | 1.86 |