Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex

Abu-Ali, Galeb S; Lacher, David W; Wick, Lukas M; Qi, Weihong; Whittam, Thomas S

doi:10.1186/1471-2164-10-296

BMC Genomics

Table 1 Properties of strains used in this study sorted by serotype.

From: Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex

Strain^a	Serotype^b	Host	Clinical^c	Location	Date^d	stx	ST^e	Source^f, Reference
DEC 9f	O26: [h11]	Human	diarrhea	USA, S. D.	1974	-	106	CDC, [80]
DEC 10e	O26:H11	Calf	scours	USA, S. D.	1989	1	106	Francis, D., [81]
F5863	O26:H11	Human	diarrhea	USA, Nebr.	1998	1	106	Fey, P., [6]
97–3250	O26:H11	Human	HUS	USA, Idaho	1997	1,2	104	O'Brien, [82]
413/89-1	O26: [h11]	Calf	diarrhea	Germany	1998	1	106	Wieler, L., [83]
DA-22	O26: [h11]	Human	diarrhea	USA, D.C.	1999	1	106	Acheson, D. W.
03-ST-296	O26:H11	Human	b. d.	USA, Mich.	2003	1	106	MDCH, [84]
CB 7505	O26:H11	Calf	no data	Germany	1998	1	106	Beutin, L., [85]
DEC 8c	O111: [h11]	Calf	scours	USA, S. D.	1986	1	107	Francis, D., [80]
DEC 8d	O111:H11	Human	diarrhea	Cuba	1953	-	106	Orskov, F., [86]
C408	O111: [h8]	Calf	diarrhea	Scotland	1993	1	106	Hart, C. A., [87]
BCL71	O111: [h8]	Calf	diarrhea	USA, Calif.	1993	1,2	106	Love, B.C.
ML178190	O111: [h8]	Human	diarrhea	USA, Nebr.	1998	1,2	106	Fey, P., [6]
W29104	O111:H8	Human	diarrhea	USA, Nebr.	1998	1,2	106	Fey, P., [6]
EK34	O111: [h8]	Human	diarrhea	USA, Wash.	1999	1	106	Tarr, P., [88]
EK35	O111:H8	Human	diarrhea	USA, Wash.	2001	1	106	Tarr, P., [88]
RW2030	O118: [h16]	Calf	diarrhea	Germany	1994	1	106	Wieler, L., [33]
RW1302	O118: [h16]	Calf	diarrhea	Germany	1994	1	106	Wieler, L., [33]
666/89	O118:H16	Calf	diarrhea	Germany	1989	1	106	Wieler, L., [33]
05482	O118:H16	Human	HUS	Germany	1996	1	106	Beutin, L., [89]
EK36	O118:H16	Human	diarrhea	USA, Wash.	2001	1	106	Tarr, P., [88]
EK37	O118:H16	Human	diarrhea	USA, Wash.	2000	1	106	Tarr, P., [88]
RDEC-1	O15: [h11]	Rabbit	diarrhea	USA, S.C.	1970s	-	681	ECRC, [81]
02–3751	O153: [h11]	Rabbit	HUS	USA, Mass.	2002	1	104	Fox, J., [90]
97–3256	O55:H7	Human	diarrhea	USA, Mich.	1997	2	73	O'Brien, [82]

a. designations assigned to strains deposited in the STEC Reference Center
b. [h] – flagellar allele determined by fliC gene sequencing; H – expression of flagellar type confirmed by reaction to antisera. To avoid confusion in text, flagellar type will be denoted as H, regardless whether it was determined by sequencing or serologic typing.
c. b. d. – bloody diarrhea; HUS – hemolytic uremic syndrome; scours – neonatal calf diarrhea.
d. Year of isolation.
e. ST – sequence type based on MLST of 7 housekeeping genes (aspC, clpX, fadD, icdA, lysP, mdh, and uidA).
f. MDCH – Michigan Dept. of Community Health.

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ISSN: 1471-2164

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