Skip to main content

Table 3 Highly divergent alleles in strain J99

From: Genome sequence analysis of Helicobacter pylori strains associated with gastric ulceration and gastric cancer

Gene number
(J99)
Gene number (26695) Description % aa identity (J99)a % aa identity (non-J99)b % unique sites c
jhp0028 HP0032 Hypothetical 68 91 24
jhp0080 HP0087d Hypothetical 89 96 8
jhp0173 HP0185d Hypothetical 88 93 7
jhp0395 HP1029d Hypothetical 88 95 7
  1. a The sequences of the indicated gene products in strain J99 were compared with corresponding sequences in each of the other 4 strains (26695, HPAG1, B128, and 98-10), and mean % amino acid identities were calculated.
  2. b The sequences of the indicated gene products in each strain were compared in all permutations, except that comparisons involving strain J99 were excluded from analysis. Mean % amino acid identities were calculated.
  3. cPercentage of aligned sites in which the protein from strain J99 contained an amino acid different from the corresponding amino acids in proteins from 4 other strains.
  4. d Reported to be a constituent of the H. pylori core genome, based on at least one array analysis [1820].