Skip to main content

Table 3 Comparison of microarray and qRT-PCR measurements for genes encoding focal adhesion and ECM components

From: Gene expression profiles in mouse embryo fibroblasts lacking stathmin, a microtubule regulatory protein, reveal changes in the expression of genes contributing to cell motility

Symbol Microarray RT-PCR Array
Ctnnb1 -0.90 -4.59
Itgb2 -1.10 -4.32
Spock1 -0.89 -3.61
Adamts1 -0.47 -3.21
Mmp10 -1.27 -2.80
Itgav -1.33 -1.85
Entpd1 -1.45 -1.77
Itga3 -2.05 -1.47
Itgb4 -1.69 -1.20
Ctnna1 1.96 1.78
Mmp11 1.95 2.04
Col6a1 1.92 2.21
Adamts2 3.34 2.67
Cdh3 1.62 4.34
Selp 1.65 7.29
Thbs1 1.26 -2.05
Postn 3.61 -1.43
Mmp14 -0.66 1.56
Sgce -0.92 1.80
Cdh4 -1.36 2.42
Adamts5 -1.33 4.61
  1. The qRT-PCR measurements were made from a commercial 96-well plate format. Data for qRT-PCR is shown as the mean of duplicate assays. The top 15 entries show mRNAs with matching directionality of expression fold change between RT-PCR and microarray. The last 6 entries list MRNAs in which expression fold change measured by RT-PCR is in the opposite direction of the microarray data.