From: Comparison of next generation sequencing technologies for transcriptome characterization
Library | Contig | Len | Reads | Cov | AGI | Len | Evalue | Annotation |
---|---|---|---|---|---|---|---|---|
Ath-rand | 08061 | 357 | 586 | 34.8 | AT1G67090 | 1025 | 0.0 | RuBisCO small subunit 1A (RBCS-1A) (ATS1A) |
Ath-rand | 00035 | 1326 | 541 | 96.8 | AT1G54040 | 1370 | 0.0 | TASTY, ESP (EPITHIOSPECIFIER PROTEIN) |
Ath-rand | 08724 | 1653 | 391 | 90.0 | AT5G26000 | 1836 | 0.0 | TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE1) |
Ath-rand | 08295 | 1175 | 278 | 94.6 | AT2G42840 | 1242 | 0.0 | PDF1 (PROTODERMAL FACTOR 1) |
Ath-rand | 08670 | 310 | 258 | 31.5 | AT5G38410 | 984 | 4e-175 | RuBisCO small subunit 3B (RBCS-3B) (ATS3B) |
Ath-rand | 00011 | 240 | 229 | 23.4 | AT1G67090 | 1025 | 9e-43 | RuBisCO small subunit 1A (RBCS-1A) (ATS1A) |
Ath-rand | 00660 | 640 | 219 | 76.9 | AT2G21660 | 832 | 2e-157 | ATGRP7 (Cold, Circadian Rhythm, RNA Binding 2) |
Ath-rand | 07960 | 927 | 215 | 52.6 | AT5G60390 | 1764 | 0.0 | elongation factor 1-alpha/EF-1-alpha |
Ath-rand | 04760 | 1157 | 206 | 82.3 | AT3G12145 | 1406 | 0.0 | FLR1 (FLOR1); enzyme inhibitor |
Ath-rand | 08550 | 373 | 190 | 100 | ATCG00220 | 105 | 3e-53 | PSBM, PSII low MW protein |
Eca-oligo | 19682 | 387 | 850 | 83.2 | AT5G39170 | 465 | 2e-7 | Unknown protein |
Eca-oligo | 19707 | 2089 | 784 | 100 | AT1G70370 | 1878 | 0 | BURP domain-containing protein/polygalacturonase |
Eca-oligo | 18128 | 151 | 707 | 10.0 | AT3G47550 | 1505 | 0.02 | C3HC4-type RING finger family protein |
Eca-oligo | 19695 | 308 | 678 | 100 | AT5G52160 | 288 | 1e-15 | protease inhibitor/seed storage/lipid transfer protein |
Eca-oligo | 19793 | 940 | 608 | 100 | AT2G36830 | 753 | 6e-102 | GAMMA-TIP (Tonoplast intrinsic protein gamma) |
Eca-oligo | 18734 | 849 | 485 | 100 | AT3G16640 | 504 | 7e-52 | TCTP (Translationally Controlled Tumor Protein) |
Eca-oligo | 00048 | 2823 | 450 | 80.0 | AT5G35750 | 3528 | 0 | AHK2 (Arabidopsis Histidine Kinsase 2) |
Eca-oligo | 18697 | 144 | 450 | 24.7 | AT4G06746 | 584 | 0.31 | RAP2.9 (related to AP2 9); transcription factor |
Eca-oligo | 19623 | 2638 | 421 | 81.4 | AT2G01830 | 3240 | 0 | WOL (CYTOKININ RESPONSE 1) |
Eca-oligo | 19622 | 120 | 415 | 6.4 | AT1G23800 | 1866 | 1 | ALDH2B7 (Aldehyde dehydrogenase 2B7) |
Eca-rand | 15341 | 109 | 4296 | 6.9 | AT4G03930 | 1575 | 0.23 | Pectinesterase |
Eca-rand | 15345 | 162 | 4274 | 12.0 | AT3G59430 | 1353 | 0.33 | Unknown protein |
Eca-rand | 15162 | 315 | 852 | 19.7 | AT5G26670 | 1596 | 0.18 | Pectinacetylesterase, putative |
Eca-rand | 15258 | 606 | 726 | 53.3 | AT3G12340 | 1137 | 0.1 | FK506 binding/peptidyl-prolyl cis-trans isomerase |
Eca-rand | 14312 | 182 | 682 | 56.2 | ATMG00030 | 324 | 2e-77 | ORF107A |
Eca-rand | 15290 | 2020 | 674 | 100 | AT1G70370 | 1878 | 0 | BURP domain-containing protein/polygalacturonase |
Eca-rand | 15208 | 1052 | 514 | 100 | AT2G36830 | 753 | 7e-102 | GAMMA-TIP (Tonoplast intrinsic protein gamma) |
Eca-rand | 14424 | 2660 | 480 | 75.4 | AT5G34750 | 3528 | 2e-162 | AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) |
Eca-rand | 15320 | 1146 | 437 | 48.3 | AT5G02500 | 2373 | 0 | HSC70-1 (heat shock cognate 70 kDa protein 1) |
Eca-rand | 15269 | 304 | 417 | 5.8 | AT2G47410 | 5221 | 0.2 | Nucleotide binding |
Pam-norm | 15603 | 133 | 37 | 9.8 | AT1G59830 | 1357 | 0.005 | PP2A-1 (protein phosphatase 2A-2) |
Pam-norm | 18074 | 139 | 32 | 10.4 | AT1G14270 | 1343 | 0.3 | CAAX amino terminal protease family protein |
Pam-norm | 8473 | 176 | 27 | 10.4 | AT4G17890 | 1688 | 0.1 | AGD8, UBP20 (Ubiquitin-specific Protease 20) |
Pam-norm | 14132 | 213 | 26 | 7.3 | AT2G40820 | 2907 | 1.9 | Proline-rich family protein |
Pam-norm | 15140 | 237 | 26 | 48.5 | AT2G41430 | 489 | 2e-13 | ERD15 (Early Responsive To Dehydration 15) |
Pam-norm | 4395 | 144 | 25 | 6.4 | AT1G45545 | 2259 | 0.08 | Similar to unknown protein |
Pam-norm | 15762 | 102 | 24 | 3.5 | AT1G01950 | 2901 | 0.2 | Armadillo/beta-catenin repeat family protein |
Pam-norm | 10833 | 112 | 20 | 6.4 | AT3G03640 | 1747 | 0.001 | GLUC (Beta-glucosidase homolog) |
Pam-norm | 18760 | 253 | 19 | 59.0 | AT4G14270 | 429 | 2e-04 | Protein containing PAM2 motif |
Pam-norm | 18306 | 208 | 18 | 48.5 | AT4G14270 | 429 | 8e-05 | Protein containing PAM2 motif |