BMC Genomics

Table 1 Insertion/deletion events between Paratyphi A AKU_12601 and ATCC9150

From: Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi

Coding effect	Gene	Mutation
pseudo-forming	aidB	217 bp del
pseudo-forming	asnB	1 bp del (homopol)
pseudo-forming	ccmH	95 bp del
pseudo-forming	nmpC	1338 bp ins (IS10)
pseudo-forming	pduF	1 bp del (homopol)
pseudo-forming	pduG	171 del
pseudo-forming	proQ	7 bp del
pseudo-forming	rbsC	1 bp ins (homopol)
pseudo-forming	rbsR	1 bp ins (homopol)
pseudo-forming	rhlB	2 bp ins
pseudo-forming	SSPA3202	1 bp ins (homopol)
pseudo-forming	tesB	352 bp del
pseudo-forming	wcaA	1 bp ins (homopol)
pseudo-forming	yaaJ	1 bp del (homopol)
pseudo-forming	yeaG	1 bp del
pseudo-forming	yeeO	1 bp ins (homopol)
already pseudo	SSPA4008a	1338 bp ins (IS10)
coding change	pduP	6 bp VNTR
coding change	rcnA	12 bp VNTR
coding change	rmbA	9 bp del
coding change	SSPA3558a	10 bp del
coding change	ytfM	3 bp del
coding change*	SSPA0733,4,5	5770 bp VNTR
intergenic	-	1 bp ins (homopol)
intergenic	-	1 bp ins (homopol)
intergenic	-	3 bp ins (homopol)
intergenic	-	1 bp ins
intergenic	-	1 bp ins
intergenic	-	1 bp ins
intergenic	-	1 bp ins
intergenic	-	1 bp ins
intergenic	-	122 bp VNTR
RNA	rtT RNA	175 bp VNTR
rRNA	rrlC	1 bp del (homopol)
rRNA	rrlD	1 bp ins (homopol)
rRNA	rrsD	1 bp ins
sRNA	csrB	1 bp ins (homopol)
tRNA	proL	7 bp del
tRNA	tRNA-Gly	220 bp VNTR

Del – deletion; ins – insertion; homopol – insertion or deletion in homopolymeric sequence; IS10 – IS 10 transposase insertion; VNTR – variable number tandem repeat. Pseudo-forming – mutation results in formation of a pseudogene in one strain; coding change – mutation results in a change to the translated amino acid sequence but retains the reading frame; * fusion of two genes, retaining the reading frame.

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ISSN: 1471-2164

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