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Table 1 Predicted G-quadruplex sequences in the upstream regions of Group B var genes from P. falciparum clones 3D7 and HB3

From: Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes

P. falciparum clone 3D7

P. falciparum clone HB3

Gene ID1

var group2

PQS3

Gene ID4

var group2

PQS3

PF07_0139

BT

Q-1

var14

BT

Q-1

PF08_0142

BT

Q-1

var12

BT

Q-1

PF11_0007

BT

Q-1

var13

BT

Q-1

PF13_0364

BT

Q-1

var20

BT

Q-1

PFA0765c

BT

Q-1

var10

BT

Q-1

PFB1055c

BT

Q-1

var48ψ

BT

Q-1

PFC0005w

BT

Q-1

var49ψ

BT

Q-1

PFC1120c

BT

Q-1

var16

BT

Q-3

PFF1595c

BT

Q-1

var15

BT

Q-3

PFI0005w

BT

Q-1

var8

BT

Q-3

MAL7P1.212

BT

Q-1

var19

BC

Q-4

MAL8P1.220

BT

Q-1

   

PF10_0406

BT

Q-2

   

PFD1245c

BT

Q-2

   

PFL0935c

BC

Q-2

   

PFA0005w

BT

Q-3

   
  1. 1 According to PlasmoDB 5.4 http://plasmodb.org.
  2. 2 Var group: B(T/C) = var gene with an upstream region B located in telomeric (T) or centromeric (C) region. ψ = pseudogene. [4]
  3. 3 PQS: putative quadruplex sequence. The PQS in the upstream B (UpsB) regions were named UpsB-Q-1, UpsB-Q-2 and UpsB-Q-3 in order of their frequency. A 4th PQS found only in HB3 was named UpsB-Q-4.
  4. 4 According to Kraemer et al [4]