Table 2 Summary of the integrated genetic and physical map
From: A physical map of the papaya genome with integrated genetic map and genome sequence
Genetic Map | Shotgun Sequence | Physical Map | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Linkage Group | No. mapped SSR Markers | Size (cM) | Estimated Physical Size (Mbp) | No. aligned Scaffolds | Length (Mbp) | Coverage | No. aligned FPC Ctgs | No. aligned BACs | Length (CB units) | Estimated Physical Size (Mbp) | Coverage |
LG1 | 77 | 145.0 | 50.48 | 25 | 21.97 | 43.52% | 56 | 1892 | 15682 | 25.09 | 49.70% |
LG2 | 70 | 138.8 | 48.32 | 29 | 27.07 | 56.02% | 63 | 2345 | 18877 | 30.20 | 62.50% |
LG3 | 116 | 132.4 | 46.09 | 35 | 29.89 | 64.85% | 68 | 2796 | 22187 | 35.50 | 77.02% |
LG4 | 57 | 120.6 | 41.98 | 30 | 22.07 | 52.57% | 44 | 1840 | 13946 | 22.31 | 53.14% |
LG5 | 63 | 103.6 | 36.07 | 22 | 24.33 | 67.45% | 48 | 2287 | 17704 | 28.33 | 78.54% |
LG6 | 106 | 100.2 | 34.88 | 36 | 29.42 | 84.35% | 65 | 2819 | 21458 | 34.33 | 98.42% |
LG7 | 59 | 96.4 | 33.56 | 25 | 21.36 | 63.65% | 62 | 2050 | 17602 | 28.16 | 83.91% |
LG8+10 | 72 | 118.9 | 41.39 | 29 | 27.59 | 66.66% | 64 | 2502 | 19538 | 31.26 | 75.53% |
LG9+11 | 81 | 91.3 | 31.78 | 22 | 28.70 | 90.31% | 63 | 2780 | 20770 | 33.23 | 104.56% |
LG12 | 5 | 21.4 | 7.45 | 2 | 0.96 | 12.89% | 2 | 60 | 453 | 0.72 | 9.66% |
Total | 706 | 1068.6 | 372 | 255 | 233.37 | 62.73% | 535 | 21371 | 168217 | 269.15 | 72.35% |