Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response

BMC Genomics

Table 3 GO Slim Terms Over or Under Represented in Candidate Genes from Comparison Between IsoClark Plants Grown in Iron Sufficient and Iron Deficient Hydroponics Solutions

GO Slim	GO Term Description	Number of Genes with GO ID	Bonferroni Corrected P Value
GO:0000004 BP	Unknown Function	49	0
GO:0006809 BP	Nitric Oxide Biosynthesis	4	0.0006102
GO:0010025 BP	Wax Biosynthesis	5	0.00736524
GO:0019953 BP	Sexual Reproduction	5	0.01223184
GO:0008940 MF	Nitrate Reductase	4	0.00006192
GO:0008382 MF	Iron Superoxide Dismutase	3	0.01245882

GO Slim ID's statistically over or under represented in the list of differentially expressed genes comparing Clark plants grown in iron sufficient and iron limiting hydroponics conditions in comparison to their presence on the Affymetrix^® GeneChip^®. The GO Slim Column provides the GO Slim ID number and corresponding category. GO Slim categories are Biological Process (BP), Molecular Function (MF), and Cellular Component (CC). The GO Term Description column contains the best description for the GO Slim ID. The number of genes with GO ID column is the number of genes differentially expressed between IsoClark plants grown in iron sufficient and iron deficient hydroponics solutions with the corresponding GO Slim ID. The Bonferroni Corrected P-value is the statistical significance of the GO Slim ID. Only GO Slim IDs with P-values equal to or less than 0.5 were considered statistically over or under represented in the list of differentially expressed genes in comparison to the presence of the GO Slim ID on the GeneChip^®.

ISSN: 1471-2164