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Table 2 PAVE assembly results

From: PAVE: Program for assembling and viewing ESTs

  Sanger maize 454 trichome
ESTs 797,619 415,559
Mate-pairs 127,452 n/a
Contigsa 51,202 24,437
Singletons 36,780 46,162
Contigs joined by n's 14,946 n/a
Mates joined by n's 5,930 n/a
Buried ESTsb 105,574 144,349
Timec 6.7 days 6 days
ESTs in contigs:   
= 2 13,465 9,926
3–5 13,526 8,249
6–10 8,493 2,860
11–20 6,514 1,463
21–50 6,125 1,049
51–100 2,090 445
101–1000 986 412
>1000 3 33
Length of contigs:   
1–100 0 4,769
101–500 22941 61,593
501–1000 33509 3,302
1001–2000 27569 867
2001–3000 3794 60
3001–4000 165 4
4001–5000 3 2
>5000 1 2
  1. a Does not include singletons.
  2. b No mismatches were allowed for the initial BLAST bury for the Sanger, whereas one mismatch was allowed for the 454.
  3. c The initial self-BLAST of the maize and trichomes ESTs took 33 CPU hours 9 CPU hours on a super-computer, respectively, which is not included in the time.