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Table 1 Assembly of radiata pine xylogenesis ESTs from six cDNA libraries

From: Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don

Assembly

EST

Contig

Singleton

Unigene

Redundancy (%) c

Assembly for six libraries a

5,952

952

2,352

3,304

47.8

Assembly for each library b

     

   Juvenile earlywood

1,259

198

711

909

27.8

   Juvenile latewood

1,636

241

935

1,176

28.1

   Transition earlywood

694

92

410

502

27.7

   Transition latewood

799

73

371

444

44.4

   Mature earlywood

837

128

454

582

30.5

   Mature latewood

727

65

559

624

14.2

   Total of each library

5,952

797

3,440

4,237

28.8 d

  1. a: ESTs from the 5 ends of 5,952 clones were used in the assembly;
  2. b: Only 5 end ESTs in each library were used in the assemblies;
  3. c: Redundancy was estimated by: 1- (number of unigenes/number of ESTs);
  4. d: The average redundancy from each of six cDNA libraries.
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BMC Genomics

ISSN: 1471-2164

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