Table 2 List of transposable elements identified in BAC clone 2050O8.
From: Isolation and sequence analysis of the wheat B genome subtelomeric DNA
| Class, subclass, family | Copy number | Length, bp | % |
|---|---|---|---|
| Class I elements (retrotransposons) | 10 100 | 8.4 | |
| LTR-retrotransposons (Gypsy-like, Wilma) | 1 | 2577 | 2.2 |
| Non-LTR retrotransposons (LINE) | 2 | 5756 | 4.8 |
| Inverted repeats similar to O. sativa LINE reverse transcriptase | 2 | 1767 | 1.4 |
| Class II elements (DNA transposons) | 29 053 | 24.6 | |
| CACTA | 4 | 20 962 | 17.5 |
| Caspar | 1 | 11 666 | |
| Isaac | 1 | 5817 | |
| Jorge | 1 | 2210 | |
| Fergat | 1 | 1269 | |
| Mutator | 2 | 7674 | 6.4 |
| Similar to Harbinger transposase | 1 | 417 | 0.4 |
| MITE | 4 | 319 | 0.3 |
| Other known repeats | 19 019 | 15.9 | |
| Spelt52 tandem repeats | 27 | 9825 | 8.2 |
| Other tandem repeats (monomer of > 80 bp) | 1526 | 1.3 | |
| SSRs | 351 | 0.3 | |
| GSS + STS | 869 | 0.7 | |
| Direct repeats (> 100 bp) | 509 | 0.4 | |
| Region of homology to | |||
| AY485644 | 4374 | 3.7 | |
| AY951944 | 1565 | 1.3 | |
| Genes | 5 | 7257 | 6.1 |
| ESTs | 8559 | 7.1 | |
| Unassigned sequence | 45 430 | 37.9 |
