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Table 3 Comparative matching of Ca ESTs to the ESTs of other legume databases.

From: Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrate predicted and unexpected genes and novel regulators of plant immunity

Gene indices

Identity >80%

Identity>90%

Arachis hypogea

1686 (83.75)

1118 (55.54)

Cajanus cajan

1764 (87.6)

1729 (85.89)

Pisum sativum

1788 (88.8)

1599 (79.43)

Robinia pseudoacacia

245 (12.17)

79 (3.92)

Lotus japonicus

872 (43.31)

287 (14.25)

Medicago trunculata

1168 (58.02)

614 (30.50)

Glycine max

1617 (80.32)

635 (31.54)

phaseolus vulgaris

928 (46.10)

234 (11.62)

  1. The chickpea ESTs isolated in this study were compared to other legume databases like Arachis hypogea, Cajanus cajan, Pisum sativua, Robinia psedoacacia, Lotus japonicus, Medicago trunculata, Glycine max and Phaseolus vulgaris collected from NCBI and TIGR gene indices. The criteria for stand alone BLASTN were (1) exact match = 11; (2) e-value cutoff 1e-5; and (3) identity > 80% and 90% at DNA sequence level.
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BMC Genomics

ISSN: 1471-2164

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