Table 3 The positional clusters which contain at least 8 genes. The xxx stands for genes with unknown functions.
From: Positive correlation between gene coexpression and positional clustering in the zebrafish genome
Chr | size | span | p-value | mean R | genes listed in order |
|---|---|---|---|---|---|
3 | 10 | 100K | 1.24e-6 | 0.289 | hoxb1a, hoxb2a, hoxb3a, hoxb4a, hoxb5a, hoxb6a, hoxb7a, hoxb8a, hoxb9a, hoxb10a |
4 | 8 | 197K | 9.19e-7 | 0.031 | zgc:86611, psmc2, psmc2, smo, si:dkey-180p18.2, si:dkey-180p18.2, ube2h, nrf1 |
5 | 8 | 89k | 1.36e-5 | 0.213 | ptges, usp20, zgc:103692, surf5, rpl7a, surf1, surf6l, ccbl1 |
13 | 8 | 139K | 6.39e-5 | 0.148 | xxx, golga5, rtf1, zgc:113197, zgc:113197, tmem39b, xxx, zgc:123267 |
15 | 17 | 174K | 2.69e-7 | 0.371 | xxx, or7.1, or2.6, or2.4, xxx, or2.7, xxx, or2.5, or2.1, or2.10, or2.8, xxx, or13.4, or5.1, or5.3, or5.4, or5.2 |
19 | 13 | 189K | 4.12e-7 | 0.229 | Kifc1, zbtb22, daxx, tpsn, xxx, xxx, xxx, psmb10, psmb11, psmb9a, xxx, brd2, fabgl |
| Â | 8 | 159K | 3.04e-5 | -0.026 | stk3, zgc:92739, rpl30, laptm4b, lyricl, rrm2b, azin1, atp6v1c1l |
20 | 8 | 168K | 1.77e-6 | -0.075 | zgc:55404, si:dkeyp-55f12.3, itpk1, chga, si:dkey-177p2.3, ahsa1, si:dkey-177p2.6, zgc:92217 |
| Â | 8 | 110K | 2.61e-4 | 0.259 | xxx, xxx, paics, cyp2j21, cyp2j22, cyp2j25, cyp2j26, cyp2j28 |
23 | 10 | 96K | 2.12e-5 | 0.606 | hoxc13a, xxx, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a |