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Table 1 SCOTS identified Photorhabdus temperata genes induced upon infection of the white grub Rhizotrogus majalis.

From: Comparative in vivo gene expression of the closely related bacteria Photorhabdus temperata and Xenorhabdus koppenhoeferi upon infection of the same insect host, Rhizotrogus majalis

Class Gene --Possible function Id/Sim% Span E-value
Cell struture     
  skp-Putative outer membrane protein (Photorhabdus luminescens, plu0681) 91/98 165 1E-11
  fliA-Flagella biosynthesis sigma factor (P. luminescens, plu1955) 98/100 150 8E-20
Regulation     
  cpxR-Response regulator (P. luminescens, plu4794) 100/100 105 1E-14
  lysR-Transcriptional activator protein (P. luminescens, plu1190) 90/96 210 7E-30
  phoP-Response regulator (P. luminescens, plu2807) 95/98 444 1E-89
Virulence     
  fhaC-Putative hemolysin secretion protein (P. luminescens, plu3065) 96/96 90 1E-09
  sctL-Putative type III secretion system (P. luminescens, plu3787) 89/92 341 3E-50
  pmt1-Similar to macrophage toxin Pmt1 (P. luminescens, plu0359) 92/92 78 2E-5
  pplA-Putative phospholipase A (P. luminescens, plu3370) 100/100 105 6E-16
  tcaC-Insecticidal toxin complex (P. luminescens, plu0515) 91/94 102 5E-21
  toxC-Putative insecticidal toxin (P. luminescens, plu4092) 96/96 82 8E-09
  virB-Putative plasmid-related protein (Serratia proteamaculans, Spro_4169) 74/86 201 3E-24
Stress response     
  gshB-Glutathione synthetase (Yersinia pseudotuberculosis, YPTS_3340) 100/100 94 1E-11
  dnaK-Heat shock protein (Vibrio cholerae, VC0395_A0382) 98/100 141 1E-17
  surA-Peptidyl-prolyl cis-trans isomerase (P. luminescens, plu0611) 90/93 195 3e-26
  uspB-Universal stress protein (Escherichia coli, ECH74115_4840) 83/95 119 1E-10
  dnaB-Replicative DNA helicase (P. luminescens, plu4359) 99/100 306 4E-48
  ptIS-Putative IS4-family transposase (Shewanella denitrificans, Sden_1127) 61/76 210 1E-20
  rpoB-DNA-directed RNA polymerase beta subunit (P. luminescens, plu0439) 93/98 159 3E-21
  topA-DNA topoisomerase I (P. luminescens, plu2435) 88/97 104 7E-14
Metabolism     
- Amino acid synthesis cysK-Cysteine synthase A/O-acetylserine sulfhydrolase A (P. luminescens, plu1395) 96/99 201 1E-20
- Amino acid metabolism selD-Selenophosphate synthetase (P. luminescens, plu2551) 90/95 291 1E-43
- Amino acid tRNA synthesis def-Peptide deformylase/N-formylmethionylaminoacyl-tRNA deformylase (P. luminescens, plu4695) 94/97 201 2E-27
- Cofactor biosynthesis bioB-Biotin synthetase (P. luminescens, plu1485) 100/100 90 3E-9
- Energy metabolism cyoB-Copper-type cytochrome O ubiquinol oxidase subunit I (Yersinia enterocolitica, YE3142) 95/100 180 5E-28
  yncB-NADPH: quinone reductase and related Zn-dependent oxidoreductases (E. coli, EFER_3231) 77/91 159 8E-18
- Fatty acid synthesis fabA-Beta-ketoacyl synthase (Saccharopolyspora erythraea; SACE_0023) 44/63 237 9E-18
- Glucose metabolism kdgK-2-dehydro-3-deoxygluconokinase (P. luminescens, plu0177) 81/92 111 7E-13
- Nucleotide synthesis purH-Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (P. luminescens, plu0495) 86/92 213 6E-28
- Protein synthesis glnD-PII uridylyl-transferase (P. luminescens, plu0670) 98/100 144 1E-21
  lspA-Signal peptidase II (P. luminescens, plu0592) 35/36 110 3E-14
- Protein folding trxA-Thioredoxin (Vibrio fischeri, VF_2461) 83/98 159 4E-18
- TCA cycle pckA-Phosphoenolpyruvate carboxykinase (P. luminescens, plu0100) 93/97 300 9E-48
Nutrition     
- Amino acid acquisition artM-Putative ABC amino acid transport system (Yersinia pestis; YPDSF_3926) 86/95 168 2E-20
- Ion uptake pchC-Putative pyochelin siderophore biosynthetase (Y. pseudotuberculosis, YpsIP31758_0684) 70/78 216 3E-26
- Importing system tolB-Periplasmic component of the Tol biopolymer transport system (P. luminescens, plu1455) 96/99 213 8E-33
Unknown     
  ptst1-Hypothetical protein (P. luminescens, plu3488) 91/97 190 5E-11
  ptst2-Hypothetical protein (P. luminescens, plu2670) 75/85 177 1E-16
  ptst3-No similarity to known genes    
  ptst4-No similarity to known genes    
  1. Underlined genes were also upregulated in Xenorhabdus koppenhoeferi during infection of R. majalis. Other genes were exclusively induced in P. temperata and similar sequences of double-underlined genes were absent in the genome of X. koppenhoeferi.