Class | Gene --Possible function | Id/Sim% | Span | E-value |
---|---|---|---|---|
Cell struture | Â | Â | Â | Â |
 | skp-Putative outer membrane protein (Photorhabdus luminescens, plu0681) | 91/98 | 165 | 1E-11 |
 | fliA-Flagella biosynthesis sigma factor (P. luminescens, plu1955) | 98/100 | 150 | 8E-20 |
Regulation | Â | Â | Â | Â |
 | cpxR-Response regulator (P. luminescens, plu4794) | 100/100 | 105 | 1E-14 |
 | lysR-Transcriptional activator protein (P. luminescens, plu1190) | 90/96 | 210 | 7E-30 |
 | phoP-Response regulator (P. luminescens, plu2807) | 95/98 | 444 | 1E-89 |
Virulence | Â | Â | Â | Â |
 | fhaC-Putative hemolysin secretion protein (P. luminescens, plu3065) | 96/96 | 90 | 1E-09 |
 | sctL-Putative type III secretion system (P. luminescens, plu3787) | 89/92 | 341 | 3E-50 |
 | pmt1-Similar to macrophage toxin Pmt1 (P. luminescens, plu0359) | 92/92 | 78 | 2E-5 |
 | pplA-Putative phospholipase A (P. luminescens, plu3370) | 100/100 | 105 | 6E-16 |
 | tcaC-Insecticidal toxin complex (P. luminescens, plu0515) | 91/94 | 102 | 5E-21 |
 | toxC-Putative insecticidal toxin (P. luminescens, plu4092) | 96/96 | 82 | 8E-09 |
 | virB-Putative plasmid-related protein (Serratia proteamaculans, Spro_4169) | 74/86 | 201 | 3E-24 |
Stress response | Â | Â | Â | Â |
 | gshB-Glutathione synthetase (Yersinia pseudotuberculosis, YPTS_3340) | 100/100 | 94 | 1E-11 |
 | dnaK-Heat shock protein (Vibrio cholerae, VC0395_A0382) | 98/100 | 141 | 1E-17 |
 | surA-Peptidyl-prolyl cis-trans isomerase (P. luminescens, plu0611) | 90/93 | 195 | 3e-26 |
 | uspB-Universal stress protein (Escherichia coli, ECH74115_4840) | 83/95 | 119 | 1E-10 |
 | dnaB-Replicative DNA helicase (P. luminescens, plu4359) | 99/100 | 306 | 4E-48 |
 | ptIS-Putative IS4-family transposase (Shewanella denitrificans, Sden_1127) | 61/76 | 210 | 1E-20 |
 | rpoB-DNA-directed RNA polymerase beta subunit (P. luminescens, plu0439) | 93/98 | 159 | 3E-21 |
 | topA-DNA topoisomerase I (P. luminescens, plu2435) | 88/97 | 104 | 7E-14 |
Metabolism | Â | Â | Â | Â |
- Amino acid synthesis | cysK-Cysteine synthase A/O-acetylserine sulfhydrolase A (P. luminescens, plu1395) | 96/99 | 201 | 1E-20 |
- Amino acid metabolism | selD-Selenophosphate synthetase (P. luminescens, plu2551) | 90/95 | 291 | 1E-43 |
- Amino acid tRNA synthesis | def-Peptide deformylase/N-formylmethionylaminoacyl-tRNA deformylase (P. luminescens, plu4695) | 94/97 | 201 | 2E-27 |
- Cofactor biosynthesis | bioB-Biotin synthetase (P. luminescens, plu1485) | 100/100 | 90 | 3E-9 |
- Energy metabolism | cyoB-Copper-type cytochrome O ubiquinol oxidase subunit I (Yersinia enterocolitica, YE3142) | 95/100 | 180 | 5E-28 |
 | yncB-NADPH: quinone reductase and related Zn-dependent oxidoreductases (E. coli, EFER_3231) | 77/91 | 159 | 8E-18 |
- Fatty acid synthesis | fabA-Beta-ketoacyl synthase (Saccharopolyspora erythraea; SACE_0023) | 44/63 | 237 | 9E-18 |
- Glucose metabolism | kdgK-2-dehydro-3-deoxygluconokinase (P. luminescens, plu0177) | 81/92 | 111 | 7E-13 |
- Nucleotide synthesis | purH-Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (P. luminescens, plu0495) | 86/92 | 213 | 6E-28 |
- Protein synthesis | glnD-PII uridylyl-transferase (P. luminescens, plu0670) | 98/100 | 144 | 1E-21 |
 | lspA-Signal peptidase II (P. luminescens, plu0592) | 35/36 | 110 | 3E-14 |
- Protein folding | trxA-Thioredoxin (Vibrio fischeri, VF_2461) | 83/98 | 159 | 4E-18 |
- TCA cycle | pckA-Phosphoenolpyruvate carboxykinase (P. luminescens, plu0100) | 93/97 | 300 | 9E-48 |
Nutrition | Â | Â | Â | Â |
- Amino acid acquisition | artM-Putative ABC amino acid transport system (Yersinia pestis; YPDSF_3926) | 86/95 | 168 | 2E-20 |
- Ion uptake | pchC-Putative pyochelin siderophore biosynthetase (Y. pseudotuberculosis, YpsIP31758_0684) | 70/78 | 216 | 3E-26 |
- Importing system | tolB-Periplasmic component of the Tol biopolymer transport system (P. luminescens, plu1455) | 96/99 | 213 | 8E-33 |
Unknown | Â | Â | Â | Â |
 | ptst1-Hypothetical protein (P. luminescens, plu3488) | 91/97 | 190 | 5E-11 |
 | ptst2-Hypothetical protein (P. luminescens, plu2670) | 75/85 | 177 | 1E-16 |
 | ptst3-No similarity to known genes |  |  |  |
 | ptst4-No similarity to known genes |  |  |  |